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GT15438

CSHL Arabidopsis genetrap mutant lines

Original: GT15438

Phenotypes

Morphological phenotypes

Original description

  • seim-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15438

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6214558 [Map]; Strand: w
      • AT2G14560.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: 0; Region: exon2 (CDS)
      • AT2G14560.2 - [+] show detail - Protein of unknown function (DUF567)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15438 - 5-prime edge 
    CCTACTTTCT CCCTGCGGAG GAGGGTGCTC TACTATACAC GGTGAAAAGA 
    TCGTCGATGA TTCAGCTAGC CCCCAAACTT GAGGTGTTTT TGGCTAACAA 
    CGTAGAGGAG AAGATATGTG ATTTCAAAGT CAAAGGGGCC TGGCTCGACG 
    ACTCTTGTGT TGTCTACGCC GGCGATTCTG ACACCATTAT TGCCCACGTA 
    AACAAACTCT CTTTCCTTAT TTTTGTTTTA GAAGACAGTA TTTTACATGT 
    AAATGTTTAT ATCATATATT TTCTAAATAT CGAATAAAGT TTTTTTTTAA 
    AATGCATTTA GTGATACATT ATTTTACTAC AAGTTTTACA GTATATTAAA 
    TATTTAAAAA TTAAAGAAGA TAAAATTTTT TTGATACATC TGGAATAAAC 
    ATGTGTATAT ATTATCCCCA TCGATATATA TTATAGGAAG CTGGGAGTTT 
    GCCAATGTGT TATTAATTGT AAAAACTTGA AAAATAAAAG TGGTATGGTT 
    TGAATGACAG ATGTGCGGAA AGCAAACGAT GCGAGGTTTT TTCTTCGGAA 
    AGGACCATTT CTCCGTCACT GTTGAAAGAA CGTT

AT2G14560.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Curator Summary
Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.
Computational Description
LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA (LURP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G33840.1); Has 352 Blast hits to 352 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G14560.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Curator Summary
Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.
Computational Description
LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA (LURP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G33840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR