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GT15406

CSHL Arabidopsis genetrap mutant lines

Original: GT15406

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15406

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 577068 [Map]; Strand: w
      • AT4G01400.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (CDS)
      • AT4G01400.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15406 - 5-prime edge
    AATGGCGGAA ATTGGGCTGT TGAGAAGCAT AATCGAAAAT CTCCTTGGCG 
    AGGAGAGGAT CCGATTGCGA AGCTATGAGC TTTTGAACCC GAGTCGGAGA
    CCCGATTGGG GATTTAGGGT TCGAGACAAT CGGTTTTCGA GCTTCATGTT
    CAGATGAAGA ATAGAACAGA AAACGCGAGG ATGTCGATAA CGGAGAAGTT
    AAGTGGCGAA AAACGGCGGC GAAGTCGTAG ATCGGCCGGC GAATCATTTG
    TCGGAGTTTT TTTTTAATAA ATCGGCCGTT GGAAGTGAGA CTTGTATCAG
    TCAGCAAATT ATCAAATATC TCTCTGTACA CAATAGTTTT AGTGTAGGCC
    CAATTTTATA ATGGGCTTAT AATTGAGGCC CAGGTAGCAT CCACAGCATT
    GTCGGTGACT ACAGTGTCGG TGGTGCGGTA TCTCAGTTAG TGGGATTAAA
    TAACAGATTC TTCTTAAATG TGATTATTAT TTATTTTGGA AGCTTACTAA
    TAATATATGG AATTTG

AT4G01400.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01400.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).
Link
InterPro Scan - TAIR