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GT15318

CSHL Arabidopsis genetrap mutant lines

Original: GT15318

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15318

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6539484 [Map]; Strand: c
      • AT3G18950.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 826; Region: intergenic
      • AT3G18952.1 - [+] show detail - pre-tRNA
        Distance: -1147; Region: intergenic
    Flanking Genome Sequence: GT15318 - 3-prime edge 
    TTTTACCGAC CGTATCATAC GAATCGTATG TTAGGTTGAT TTGTTGGTTC 
    AGACGTTCAG TTTGTTGGAA AAAGAATTAG CCACTGGAAA AACGGAGAGG 
    ATTGTAATAT TCTATTTTTT TGTCTTCAAG AACGTAAGTA AAAAGTCTTC 
    TTTTTCGTTG GATATATGTA TTGCTATTTC TACACATTGA CATTTGACAT 
    ATAGACATGC ACACACCACC CTTCTGTTCA TATTTTCAAA TAGCACGAAA 
    AGCTGATAAA TCTTGATCTA TTAAGCAATT TAGAAGTTTA AGAGTTTGGT 
    TAATTAGTTC TAAATTGTAA AATTCATAAT GATAATTTTA ATGACAATGA 
    AGTTCCTAAA TTTAAGTAGT AGAAATATGC TTTGATTCGT AGAAAAGAAT 
    CTCTGTAGAT TGCTTTTATG TGTATTAACC CAACTATATT AACAATGACG 
    ATGTCTACAG ATTTTCACTA TAAAATTTTA TTTGTCATTT TTAGTGTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6593897 [Map]; Strand: w
      • AT3G19070.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15318 - 5-prime edge 
    CCTACTTTCT CCCTGGATAG ATGAGCATTT AAAAAAGTTG GATGAAGAGA 
    CGAAAGAAGA TGAAGATGAA GATGCGGCGA AGATAATTCA AGATCGGAGT 
    ACCGCGAGAG AAGCAGGTTA ATTTCTTCTC CTTCACCTTG TAATTTAAAG 
    TTGTTCCTCT CTCATTCTCA AATCTTGTTG GGTCTTGGAA ACGCAGAAAT 
    TGCTCTACTT ATGGATCTCC GTCAGAACTT TCTTCCACCA CCATCGATGT 
    CATCCTCCTC TCTTCAACCA CCGTCATCGT CAACTCTCGC ACCATCGTCA 
    TCATCCTCTC TTCAACCACC CGCACCGTTG ATAGACTTCT TTCGGTCATC 
    AGTGTCATAC TCTCATCAAC CACCGTCATC TTCAACTCTC GCAACATCAT 
    CGTCACCGTC TCTTCAACCA CCGTCGATGT CATCCTCCTC TCTTCAACCA 
    CCCGCATCTT TGAGGGAATT CTTTACGTCG TCAGTGTCAT ACTCTCATCA 
    GCCATCTTCA TCTTCACTCT CACAACATCT TCGTTCTTTC CGTCGTCAAT 
    GCCATACTCT GTTCGACCTC CC

AT3G18950.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G49450.1); Has 30107 Blast hits to 16274 proteins in 601 species: Archae - 20; Bacteria - 4381; Metazoa - 11289; Fungi - 6965; Plants - 3765; Viruses - 0; Other Eukaryotes - 3687 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18952.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR

AT3G19070.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G06800.2); Has 18617 Blast hits to 9609 proteins in 654 species: Archae - 8; Bacteria - 972; Metazoa - 4790; Fungi - 3902; Plants - 2478; Viruses - 331; Other Eukaryotes - 6136 (source: NCBI BLink).
Link
InterPro Scan - TAIR