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GT15177

CSHL Arabidopsis genetrap mutant lines

Original: GT15177

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15177

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3080609 [Map]; Strand: c
      • AT3G10000.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 1702; Region: intergenic
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: 1205; Region: intergenic
    Flanking Genome Sequence: GT15177 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AATCAAGGGT TTGCGGATTG AGGGACAGAA ACTGATAGAT GGGAAGAGAC 
    ATAATTTTAA AGATAATGAT AAATAGAGAA ACTGGTATGA TTTTACGATG 
    AACTAGTGAG ATTGTCCCCT ACTCTGTCCA CCTATGACTT GACATATCAT 
    CCACTCGATA TTTCCATTCC TAAATAATGA AATCTACATT ATTGACCTAT 
    ATATTGACCT GTAAGTATGT TTTTCTTTCT CTATTTTGAT TTCTTGCCGC 
    TTCAACGGCA GTGAAACGCT CGGTAATCGG GAGTTCCCAT GATTTTTCCC 
    AAATCAAAGA GAAAACTAGA GCGGATGCTA AATGTTACAT GTATCATGTT 
    CAATATTGGA CCCTAATTGT TGTATGACTC ATGTTCTTAT ATATCTACAA 
    GATTATAAAA GCCCTTTAAC AAAGAAAAAA ATACCTAGAA GAAAAGTGAG 
    ACGGGATCAA TGATTAACAT GTGAAAAGCA ATCTGATACC ATTGTTTTAA 
    AGTATCCAAA TAGTCGTGAT TCAAAGAAGA TAAAGGAGGG CAATAGACAT 
    TTTTACCATC CATCCATTTA TGAACACGTG ACTCTTTTTT AAAGAGCTAT 
    GGGCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3080609 [Map]; Strand: c
      • AT3G10000.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 1702; Region: intergenic
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: 1205; Region: intergenic
    Flanking Genome Sequence: GT15177 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AATCAAGGGT TTGCAAATTG AGGGACAGAA ACTGATAGAT GGGAAGAGAC 
    AATAATTTTA AAATAATGAT AAATAGAGAA ACTGGTATGA TTTTACGATG 
    AAGTAGTGAG ATTGTCCCCT ACTCTGTCCA CCTATGACTT GACATATCAT 
    CCACTCGATA TTTCCATTCA TAAATAATGA AATCTACATA TATGACCTAT 
    ATATTGACCT GTAAGTATGT TTTTCTTTCT CTATTTTGAT TTCTTGCCGC 
    TTCAACGGCA GTGAAACGCT CGGTAATCGG GAGTTCCCAT GATTTTTCCC 
    AAATCAAAGA GAAAACTAGA GCGGATGCTA AATGTTACAT GTATCATGTT 
    CAATATTGGA CCCTAATTGT TGTATGACTC ATGTTCTTAT ATATCTACAA 
    GATTATAAAA GCCCTTTAAC AAAGAAAAAA ATACCTAGAA GAAAAGTGAG 
    ACGGGATCAA TGATTAACAT GTGAAAAGCA ATCTGATACC ATTGTTTTAA 
    AGTATCCAAA TAGTCGTGAT TCAAAGAAGA TAAAGGAGGC CAATAGACAT 
    TTTTACCATC CATCCATTTA TGAACACGTG ACTCTTTTTT AAGAGCTATG 
    GGCTTTGTGA TTTAGCCCTT CATGTTTATA AATGGGCTGT GAATTCACAG 
    CCCATCATGA AACAATATAT AATTCAAGCA AAAACAAAAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3080566 [Map]; Strand: c
      • AT3G10000.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 1659; Region: intergenic
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: 1248; Region: intergenic
    Flanking Genome Sequence: GT15177 - 5-prime edge 
    TTTCCATCCT ACTTTCTCCC TGCCCTTGAT AACTAATAAC TATATATCTA 
    TATATACATT TTTGCAGCCA CTTTGTGAAA TAAATCCTCA AGTTGAGATT 
    TATTTATAGT AGTTGTCACT GGCATTTAAT AATTGTTTTT GATAATTAGA 
    AAATAAATTT TCGAATTAAA TGTTTGCATT TAACTACCTT CCCAAAATCT 
    CTCTGCATTA ACTATACGAT TAGTTACTAA AATAAAACTT CCAAAATATT 
    TAATATCATT TAAATACTAC AAAATTATCA TTTTTGATAT TGCTTTTTTT 
    TATGACTATA ACAATTCGAT TATAAGCAGC AAACCGTAGA GATATTTGAT 
    AGCAATTAAT TACTACAAAA TTACAAAATA TTTAGACAAT GATTCATAAA 
    CATATCATAA ATAAGATCAA CATTAATCAA ATAAATAAGT TTTTTTACGG 
    GACGGGTTGG CGGGACGGGT TTGGCAGGAC GTTATTTAAT AACAATTGTA 
    AACTATAAAA TGAAAATATT TGATAGATAG ATAAAATTTG AAAATTTTTA 
    TATATACTAA CTTTAAGAAA ATAAATTGTC CCCGCGATAT ACCGCAGGTT 
    AAAAACTAGT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3080556 [Map]; Strand: c
      • AT3G10000.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 1649; Region: intergenic
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: 1258; Region: intergenic
    Flanking Genome Sequence: GT15177 - 5-prime edge 
    ACTTTCTCCC TGCCCTTGAT CACTAATAAC TATATATCTA TATATACATT 
    TTTGCAGCCA CTTTGTGAAA TAAATCCTCA AGTTGAGATT TATTTATAGT 
    AGTTGTCACT GGCATTTAAT AATTGTTTTT GATAATTAGA AAATAAATTT 
    TCGAATTAAA TGTTTGCATT TAACTACCTT CCCAAAATCT CTCTGCATTA 
    ACTATACGAT TAGTTACTAA AATAAAACTT CCAAAATATT TAATATCATT 
    TAAATACTAC AAAATTATCA TTTTTGATAT TGCTTTTTTT TATGACTATA 
    ACAATTCGAT TATAAGCAGC AAACCGTAGA GATATTTGAT AGCAATTAAT 
    TACTACAAAA TTACAAAATA TTTAGACAAT GATTCATAAA CATATCATAA 
    ATAAGATCAA CATTAATCAA ATAAATAAGT TTTTTTACGG GACGGGTTGG 
    CGGGACGGGT TTGGCAGGAC GTTATTTAAT AACAATTGTA AACTATAAAA 
    TGAAAATATT TGATAGATAG ATAAAATTTG TAAATTTTTA TATATACTAA 
    CTTTAAGAAA ATAAATTGTC CCCGCGATAT ACCGCAGGTT AAAATCTAGT 
    TTAATTATTA TTTATTATGA TAACAGCATG AATGTATAAT ACTATTAATG 
    GGTCAATCTG CTTTGAAATT TGACCAATCA CTGGCATTTA TATAAGTCAT 
    AACGAAAAAT CATCAAAAAA AAAAAAAAAA GGG

AT3G10000.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
embryo sac development arrest 31 (EDA31); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G03680.1); Has 623 Blast hits to 458 proteins in 60 species: Archae - 1; Bacteria - 0; Metazoa - 56; Fungi - 11; Plants - 519; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10010.1

Model type
Protein coding
Short Description
demeter-like 2
Curator Summary
Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.
Computational Description
demeter-like 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3292 Blast hits to 3211 proteins in 1332 species: Archae - 246; Bacteria - 2331; Metazoa - 80; Fungi - 82; Plants - 273; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).
Link
InterPro Scan - TAIR