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GT15150

CSHL Arabidopsis genetrap mutant lines

Original: GT15150

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15150

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21574049 [Map]; Strand: w
      • AT3G58260.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15150 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCTTCAT GCCAGAGTCT 
    GGCCTACATG AAAAGTGTAG GATTTAAGCT GGATTGGTTG GAGAAAAAAC 
    TTGATGAGTT GTTTGAAAAG AAGAAGGAAG AAGCTGATAA GATTCGGATG 
    CAAAACATTG AGGAAGAGCT CAAAGATTTG AGGCAGAAGT GCTCAAGCCT 
    TGAAGCTCTT TTGAAGAAGG AGAAGACAGG TGTTTTGGCC GCCAAAGCTC 
    CTTTCTTGTT TTTTAATAAC GTTAACGATG ATGACCTTAA GTGGATCTTA 
    CGAGCGGTAA TGTACACCCT CATCATGATG TTGTTCATTT TCAATATAAA 
    TCTCGTCAAT GATGCAAGGC TTTGTTGGAT CTCTTCTATT TCTCTATGGA 
    CTTCTGATAT CAGGTTTTCT ATTTTGATAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21596537 [Map]; Strand: w
      • AT3G58370.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15150 - 5-prime edge 
    CTTTCTCCTA CGATAACGGA CCGTTCACAA GATACCCAGC ATTTTTGGCA 
    TGAAGGTTGG GAAGAGGGAT CATAGATGTA AAACCCGAGC CAAGATTTCT 
    TTGATTAAAC CAATTTTGTT TCTCTGTTCA CGAAATATAT AGAAACTCTA 
    ATCCAAACAA GCAATAAAAT TGCACAATGC ATAACAAGAA TCTTGCAGCA 
    GCACAAAGCC ACATGAGTGT CCATGACAAG TTGTAGAATC ATAAAATATC 
    CTTTATAATA TAAAGTTTAG AAATAAAGAA TTATCTCCTC GTTGGGAGAG 
    TTTGTCCGTA AGTTGATTTA TTATAGTTAA GGAGAATTGT GCATATCTTC 
    TCCATCCACA AGGCAATGCT CTAGCATCAT CAACCACCAG ATACAGAGAC 
    AAACTATTAT TAAATTTATT TCCCTTTGGA TAGGCCAGAA GATGCCTGCA 
    AACAAAAAGC AGTTGCAAAA AAAAGTGGAT GTCCTCGTAA ACCTAAATTG 
    GACTAATACA GTTAGAAAAA AAGTTTTAGT TTCTTAAGTA CCATTTGCAG 
    CCACCAATCA CAAATGGATC AGAATAAATT TTGTCATATT GCAAAGTGGA 
    GAAATTCTTA ATCACCCAAG TGAACTTGTT ATCAACTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21596550 [Map]; Strand: w
      • AT3G58370.1 - [+] show detail - TRAF-like family protein
        Distance: -12; Region: promoter
    Flanking Genome Sequence: GT15150 - 5-prime edge 
    TAACGGACCG TTCACAAGAT ACCCAGCATT TTTGGCATGA AGGTTGGGAA 
    GAGGGATCAT AGATGTAAAA CCCGAGCCAA GATTTCTTTG ATTAAACCAA 
    TTTTGTTTCT CTGTTCACGA AATATATAGA AACTCTAATC CAAACAAGCA 
    ATAAAATTGC ACAATGCATA ACAAGAATCT TGCAGCAGCA CAAAGCCACA 
    TGAGTGTCCA TGACAAGTTG TAGAATCATA AAATATCCTT TATAATATAA 
    AGTTTAAAAA TAAAGAATTA TCTCCTCGTT GGGAGAGTTT GTCCGAAAGT 
    TGATTTATTA TAGGTAAGGA GAATTGTGCA TATCTTCTCC ATCCACAAGG 
    CAATGCTCTA GCATCATCAA CCACCAGATA CAGAGACAAA CTATTATTAA 
    ATTTATTTCC CTTTGGATAG GCCAGAAGAT GCCTGCAAAC AAAAAGCAGT 
    TGCAAAAAAA AGTGGATGTC CTCGGAAACC TAAATTGGAC TAATACAGTT 
    AGAAAAAAAG TTTTAGTTTC TTAAGTAGCA TTTGCAGCCA CCAATCACAA 
    ATGGATCAGA ATAAATTTTG TCATATTGCA AAGTGGAGAA ATTCTTATTC 
    ACCCAAGTGA ACTTGTTATC AACT

AT3G58260.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 1068 Blast hits to 958 proteins in 113 species: Archae - 2; Bacteria - 2; Metazoa - 237; Fungi - 51; Plants - 742; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58370.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58410.1); Has 339 Blast hits to 308 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 3; Plants - 318; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR