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GT15119

CSHL Arabidopsis genetrap mutant lines

Original: GT15119

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15119

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12536579 [Map]; Strand: c
      • AT2G29150.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15119 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGACAGAA 
    GTGGTGACCT GAAATCCTTT GGCTTGCCAT TCACGTAAGC GTTCTTGAAG 
    CTGAGTTTCG TCTCTGGCAC ATGTGTGAAC TCTTGCTCCC AACATGGCTA 
    GTTCCTCCAC TACAGCTTCT CTATGCAAAG TAGACATGCA ATACCATCAT 
    TTAAGCTTTT TTCATCTCAC TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12536516 [Map]; Strand: c
      • AT2G29150.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15119 - 5-prime edge 
    TTTCTCCCTG CTTCTGTCTG CGACGTCTCT TCTCGTGAGC AACGAGAGAA 
    ACTCATGGAA ACCGTTTCCT CTGTCTTCCA AGGAAAACTC AACATCCTCG 
    TAAGTTGATG TGTATATATA TATATATATA ATAGCATAAA AAAAAATCTA 
    GTGATTTTGT TGTGTCTGGT TTAAGTATAT ATATACATAA TGTATATAGG 
    TAAATAATGC GGGAACGGGT ATAATAAAGC CGAGTACAGA GTATACAGCA 
    GAAGATTACT CGTTTCTGAT GGCTACAAAT CTCGAGTCCG CTTTTC

AT2G29150.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29360.1); Has 128631 Blast hits to 128307 proteins in 3642 species: Archae - 1006; Bacteria - 83541; Metazoa - 6111; Fungi - 6791; Plants - 3070; Viruses - 5; Other Eukaryotes - 28107 (source: NCBI BLink).
Link
InterPro Scan - TAIR