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GT15093

CSHL Arabidopsis genetrap mutant lines

Original: GT15093

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15093

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18985746 [Map]; Strand: w
      • AT2G46230.1 - [+] show detail - PIN domain-like family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G46230.2 - [+] show detail - PIN domain-like family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G46240.1 - [+] show detail - BCL-2-associated athanogene 6
        Distance: -387; Region: promoter
    Flanking Genome Sequence: GT15093 - 3-prime edge 
    GCCACAAAGC TTTGAAGCAG TGAGTAAACG ATTCGTCTTC CTTCAAATTT 
    GATCCTTTTT TAAAGAGATT CTTAGTTTTG TTTTTATTTA TATAGTTACA 
    AGGAAGAGGT TCTGAATCCA AACAAGAAGG ACCTCACGGA ACTTCCGAGA 
    AACGTGTAAG CTTCCTACCA CTGTTAGCTT TCGTTGCCAA GTTGTAATTA 
    TTTGGGTTTC GTTTGATTTG TTTTTGGATC AGACCGAGTG TTCCTGCAGG 
    GCTTTTCTTT TCTTACAACT CTACATTGG

AT2G46230.1

Model type
Protein coding
Short Description
PIN domain-like family protein
Computational Description
PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 697 Blast hits to 697 proteins in 237 species: Archae - 32; Bacteria - 0; Metazoa - 241; Fungi - 212; Plants - 105; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46230.2

Model type
Protein coding
Short Description
PIN domain-like family protein
Computational Description
PIN domain-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 609 Blast hits to 609 proteins in 228 species: Archae - 22; Bacteria - 0; Metazoa - 231; Fungi - 162; Plants - 97; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46240.1

Model type
Protein coding
Short Description
BCL-2-associated athanogene 6
Curator Summary
A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.
Computational Description
BCL-2-associated athanogene 6 (BAG6); CONTAINS InterPro DOMAIN/s: Apoptosis regulator, Bcl-2 protein, BAG (InterPro:IPR003103), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 5 (TAIR:AT1G12060.1); Has 21821 Blast hits to 15371 proteins in 1199 species: Archae - 184; Bacteria - 2603; Metazoa - 10110; Fungi - 2300; Plants - 994; Viruses - 95; Other Eukaryotes - 5535 (source: NCBI BLink).
Link
InterPro Scan - TAIR