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GT15082

CSHL Arabidopsis genetrap mutant lines

Original: GT15082

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15082

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8249933 [Map]; Strand: w
      • AT3G23140.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -646; Region: promoter
    Flanking Genome Sequence: GT15082 - 5-prime edge 
    CTTTATCCCT GTCACAACTC CTTAGTGAAT GCTTCTTTTA AAAATTTGGT 
    TTTATTATTT TGTAGGTATT ACATGTTCAC ATTCAAAATA TATTTCACAC 
    TATATCTAGA TTAAATTTAA CTAAGCTTTA ATATTTCACT AGCTCCTACT 
    AGCCTTCCAA TTTTTACAAT TTTAGTTTGC AATTTTTACC CTCGATCCAA 
    ACAAATAAGT ACTTTTTT

AT3G23140.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Encodes UPRIGHT ROSETTE (URO). Overexpression of URO alters indole-3-acetic acid (IAA) homeostasis.
Computational Description
UPRIGHT ROSETTE (URO); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: auxin homeostasis, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G43540.1); Has 720 Blast hits to 720 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 4; Plants - 698; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR