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GT15065

CSHL Arabidopsis genetrap mutant lines

Original: GT15065

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15065

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7175028 [Map]; Strand: w
      • AT2G16560.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15065 - 3-prime edge
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GCAAGACATA ACATAAGTTG GTAATGCCGT AGCTACCGAT TTAATCATCA
    CATCTTTTCC TCCTTTCGAT AAAAACTTAG CTGACCATCC ATTTATCCTA
    TTTTGTAATC TATCTCTAAC AAAAGAGAAG ATTTTTGTTT TAGATCCACC
    TAGACTTTCT GGTAAACCAA GATAGGAGCC CATACCACCA AGATTAGTGA
    TTCCCAATGT TGCTTTTATT TCTGCCTTAA GTGAATCATC GACCTTATGA
    CCAAACTGTA TCGAAGACTT TGTAAAATTT ATTTGTTGTC CTGAAACCGT
    TTCATAATGC TTTAAAATTT CCAAGATTAC TCCACACTGC TCTTTGCTAG
    CTTTGCAAAA GAATAAACTA TCATCTGTAA ATAACAGATG AGTTACCGAG
    GGGCTTGCCG TAGCTACTTT CATACCAGTA ATCAATTTTT GT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20128003 [Map]; Strand: w
      • AT5G49590.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -733; Region: promoter
    Flanking Genome Sequence: GT15065 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCAAGAC ATAACATAAG 
    TTGGTAATGC CGTAGCTACC GATTTAATCA TCACATCTTT TCCTCCTTTC
    GATAAAAACT TAGCTGACCA TCCATTTATC CTATTTTGTA ATCTATCTCT
    AACAAAAGAG AAGATTTTTG TTTTAGATCC ACCTAGACTT TCTGGTAAAC
    CAAGATAGGA GCCCATACCA CCAAGATTAG TGATTCCCAA TGTTGCTTTT
    ATTTCTGCCT TAAGTGAATC ATCGACCTTA TGACCAAACT GTATCGAAGA
    CTTTGTAAAA TTTATTTGTT GTCCTGAAAC CGTTTCATAA TGCTTTAAAA
    TTTCCAAGAT TACTCCACAC TGCTCTTTGC TAGCTTTGCA AAAGAATAAA
    CTATCATCTG TAAATAACAG ATGAGTTACC GAGGGGCTTG CCGTAGCTAC
    TTTCATACCA GTAATCAATT TTTGTTGTCG CNCCNCCCCC GAACAAACGC
    NATAAGCACC TCCGTACATA GAATAAATAG GTAAGGAGAC AGTGGATCTC
    CTTGTCTTAA ACCTCTCCCC GGTATTATCA AGCCTCTAGG TTGTCCATTA
    ATAAGAACCC GATATTGAAC TGTTGTTATA CACCACATTA TCCATGAAAT
    CCACTTTTCG CAGAAACCCA TTTTTCGTAA TAATTCCTCA ATAAATTTCC
    ATTCCACCCA ATCGTAAGCT TTGCTCATAT CAGTTTTAAT GGCCATAAAT
    TTTCCTTTTC AAGATGTGTT AGTTCTAAGC CCATGAAACA TCTCC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7175079 [Map]; Strand: w
      • AT2G16560.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15065 - 5-prime edge
    CCTACTTTCT CCCTGTGTCT TGCTATAGAC TACCGAAAAC AATTACATCG 
    AAGCTCACGA GTGCGATCGC AAAATTCTGG TGGAGTTCAA ATGGTGAATC
    TAGAGGTATG CATTGGATGG CATGGGATAA GGTGTGTTAT AGTTAATCGG
    AAGGGGGTTT GGGTTTTCGT AATGTTGACG ATTTTAATTC GGCTCTTCTA
    GCTAAACAAT TATGGCGTTT AATCATGGTT CCAGATTCAC TCTTTGCGAG
    GGTTTTTAAA GGACGTTATT TTCGGACATC CAACCCTTTG GATAATATAA
    AATCGTACTC TCCATCCTAT GGTTGGAGGA GTATTTGCTC AGCTAGATCT
    CTGGTTAATA AAGGACTTAT TAAAAGAGTT GGTTCTGGAG AATCCATCTC
    AGTTTGGGAG GATCCGTGGA TTCCAACTCA ATTCCCGAGA CCAGCATTAA
    AAAATGGTTA CGCTTTTGAT CCTTCTTTGA AGGTGAAAAG TCTTATAGAC
    TCACGGACAA ATTTCTGGAA TATTGATCTT TTACAAGAGC TTTTTGCCCG
    GAAGATGTCT CGTTAATAAG TGTTTTGCAC TTGGGTGCGT CAACTAAGGA
    AGATATCCTA GGTTGGCATT TCACAAAATC TGGAAAAAAT ACAGTTAAAT
    CTGGATATCA TAC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7175075 [Map]; Strand: w
      • AT2G16560.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15065 - 5-prime edge
    TTCATCCACT TTCTCCCTGT GTCTTGCTAT AGACTACCGA AAACAATTAC 
    ATCGAAGCTC ACGAGTGCGA TCGCACAAAT TCTGGTGTAG TTCACAATGG
    TCGAATCTAG AGGTATGCAT TGGATGGCAT GGGATAAGGT GTGTTATAGT
    TAATCGGAAG GGGGTTTGGG TTTCCGTACC GACGACGATC TTAAAACGGC
    TCTTCTAGCT AAACAATTAT GGCGTTTAAT CATGGTTCCA GATTCACTCT
    TTGCGAGGGT TTTTAAAGGA CGGTATTTTC GGACATC

AT2G16560.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.7e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G49590.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR