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GT15064

CSHL Arabidopsis genetrap mutant lines

Original: GT15064

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15064

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13627451 [Map]; Strand: c
      • AT4G27210.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15064 - 3-prime edge 
    CTCTACTCTG TTCCTTCTCT GAATATCTCA AACTGTGTTC ATCTCACTCG 
    ACCAGGANAG AACTACCTCC TCTGGAAGTC TCAGTTCGAA TCTTTCCTCG 
    ATGGCCAAGG TCGTCTGGGT TTTGTCACCG GCTCCATTCC AGCTCCGAAT 
    CAGACCAGTG TAGTCTCTGA CATCGACGGA TCAACCTCTG CTTCACCAAA 
    TCCAGAGTAC TATACCTGGT TTAAGACAGA CCGTGTTGTC AAATCCTGGC 
    TCCTTGGATC TTTTTCTGAA GACATCCTCA GTGTTGTTGT CAACTGCAAC 
    ACTTCTCATG AGGTATAGAT CTCTATCGCG AATCACTTTA ATAGAGTCTC 
    CTCGTCTAGG CTGTTTGAAG GCAACGACGC TTACAGAATG TTAGTAAAAG 
    GGATAAGTCT ATGGATGCAT ATCTCAAAGA CCTCAAAAAC ATTTGTGACC 
    AACTAGCTTC TGTAGGAAGT CCTGTAACTG AAAAGATGAA GATTTTTGCT 
    GCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13627387 [Map]; Strand: c
      • AT4G27210.1 - [+] show detail - transposable element gene
        Distance: -30; Region: promoter
    Flanking Genome Sequence: GT15064 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACATGGAAC 
    ATAGATCCAT GGAACTCTAC TCTGTTCCTT CTCTGAATAT CTCAAACTGT 
    GTTCNTCTCA CTCGACCAGG AAAGAACTAC ATCCTCTGGA AGTCTCAGTT 
    CGAATCTTTC CTCGATGGCC AAGGTCGTCT GGGTTTTGTC ACCGGCTCCA 
    TTCCAGCTCC GAATCAGACC AGTGTAGTCT CTGACATCGA CGGATCAACC 
    TCTGCTTCAC CAAATCCAGA GTACTATACC TGGTTTAAGA CAGACCGTGT 
    TGTCAAATCC TGGCTCCTTG GATCTTTTTC TGAAGACATC CTCAGTGTTG 
    TTGTCAACTG CAACACTTCT CATGAGGTAT AGATCTCTAT CGCGAATCAC 
    TTTAATAGAG TCTCCTCGTC TAGGCTGTTT GAAGGCAACG ACGCTTACAG 
    AATGTTAGTA AAAGGGATAA GTCTATGGAT GCATATCTCA AAGACCTCAA 
    AAACATTTGT GACCAACTAG CTTCTGTAGG AAGTCCTGTA ACTGAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1470997 [Map]; Strand: c
      • AT4G03340.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -917; Region: promoter
    Flanking Genome Sequence: GT15064 - 5-prime edge 
    CTTTCTCCCT GGTTCCTGTG CTCTGATACC ATGAAGGCAA AATCAATTCT 
    CTGTTTTCAT TGATAAAGCT TAACTTTACA AGAGAGGGTT TTGCTTGTTT 
    ATATACAAGA GCTGAAACAT AGATAAACCC TAATGAGACT AGACAGGTGT 
    CAAACATCAA GCTGAGCACT CTGAATCAAG GGTTAGAAAA CGATTCTCCA 
    GCTTGATGTC CGTACGAGCA TTACGTGAGA TTGTCTGGGG ATTGCCAGCT 
    CCATCTTTGT CGTTTCTTGA TGTTGAAGCA AATGACCGTT GCCTCCAAAT 
    CTGTGTCGTG GGCTGCTTGG GCTTGAGTTG GGCTTTAAGC TGCTTCTTTG 
    CTGTGTTGGC TGAAACGACC GTGTTTTGGC GTTTGCCACA GAAACACTCT 
    GTTCTATTCA GAGGCTTTAC TTGAATGGTG TTGATAGCTG GAGAATATCA 
    ACACCATTCA ACGCAGCAAA GATCTTCATC TTTTCAGTTA CAGGATTTCC 
    TACAGAAGCT AGTTGGTCAC AAAAGGTGGT GATACTATCT TCTGACCAAT 
    GTCCAAGAGT AGCACAGCAG TTGAGATGAT TTTCGACTTT GGTTTTTACT 
    CTCACGAAAC ATAATTTTGA TATATGTAAA TGGATATGCT GATGACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1470997 [Map]; Strand: c
      • AT4G03340.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -917; Region: promoter
    Flanking Genome Sequence: GT15064 - 5-prime edge 
    CTTTCTCCCT GGTTCATGTG CTCTGATACC ATGAAGGCAA AATCAATTCT 
    CTGTTTTCAT TGATAAAGCT TAACTTTACA AGAGAGGGTT TTGCTTGTTT 
    ATATACAAGA GCTGAAACAT AGATAAACCC TAATGAGACT AGACAGGTGT 
    CAAACATCAA GCTGAGCACT CTGAATCAAG GGTTAGAAAA CGATTCTCCA 
    GCTTGATGTC CGTACGAGCA TTAGGTGAGA TTGTCTGGGG ATTGTCAGCT 
    CCATCTTTGT CGTTTCTTGA TGTTGAAGCA GATGACCGTT GCCTCCAAAT 
    CTGTGTCGTG GGCTGCTTGG GCTTGAGTTG GGCTTTAAGC TGCTTCTTTG 
    CTGTGTTGGC TGAAACGACC GTGTTTTGGC GTTTGCCAGA GAAACACTCT 
    GTTCTACTCA GAGGCTTTAC TTGAATGGTG TTGATAGCTG GAGAATATCA 
    ACACCATTCA ACGCAGCAAA AATCTTCATC TTTTCAGTTA CAGGATTTCC 
    TACAGAAGCT AGTTGGTCAC AAATGGTGGT GATACTATCT TCTGACCAAT 
    GTCCAAGAGT AGCAGAGCAG TTGAGATGAT TTTCGACTTT GGTTTTTACT 
    CTCACAAAAC ATAATTTTGA TATATGTAAA TGGATATGCT GATGACTGTT 
    TATTCAAGAT CTATTTCAAG TTTGGAAGAA CGAAAAGTTA TATTCTAAAC 
    AGTTATTGAT TAGCAAACTT T

AT4G03340.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G03520.1); Has 946 Blast hits to 946 proteins in 119 species: Archae - 0; Bacteria - 46; Metazoa - 549; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27210.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-249 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR