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GT15060

CSHL Arabidopsis genetrap mutant lines

Original: GT15060

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15060

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2168718 [Map]; Strand: c
      • AT4G04404.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 738; Region: intergenic
      • AT4G04405.1 - [+] show detail - transposable element gene
        Distance: 2473; Region: intergenic
    Flanking Genome Sequence: GT15060 - 5-prime edge 
    CCTACTTTCT CCCTGTATGT AAAGATGAGA ACAAAGTTTA ACAAACTAAA 
    GATTCAATCT CCAAACATAC TCCTCATTGT TCAACTACTA GACTAATCGA 
    AACCCGAGTA AGAAAACACT TCACTGAAGT CTTGTTTCGA CTCAACACAA 
    TGTAAGATCT TCTCCTCATA AGAGACTTCA AAGCATGATG GTACTGAAAC 
    AATTTTGCTA GCTTCTGGGT AGTCAATAAT GCCAAACAGT GAATAACCCA 
    TCTTCAGTTT TCTCATTTGT ACGCGCTAAT TGCTCTTTGA TCGATATGCT 
    GGAGTGTGAC TTACTTTGCA GGGAAGAAGG TAAAGGAATG AACCTGGTTT 
    TACTGCAATT ACTAGACTTG TCGAAACCCA AGTGAAAAAG CAGTTCACTG 
    AAGTCTTGTT TTGATTCAAC ACAATGTAAG ATCTTCTCCT GAGAGACTTC 
    AAAGCTTGAG GGTTGTGAAG GTAATGAAAA AAACCTGGTT TTACTGCAAT 
    TACTTGACTT GTTAAAAAGC CAAGTGAGAA AGCAGTTCAC TGAAGTCTTG 
    TTTTGATTCA ACACAATGTA AGATCTTCTC CTGAGAGACT TCAAAGCTTG 
    AGGGTTGTGA AACAATCTTC TTAGCTTCTA ATGAGTGAGA CTGTGAATTA 
    TTATCTTTAG TACGCACTAA TTGCCCTTTA ATCGATCTGT GAAGTGTTGT 
    ATGGCCACCT AAAGCTTGAA AAGACTCAAA ACTCTTGCCA CATATTTTGT 
    ATTCATAGCT GCAGCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2168719 [Map]; Strand: c
      • AT4G04404.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 739; Region: intergenic
      • AT4G04405.1 - [+] show detail - transposable element gene
        Distance: 2472; Region: intergenic
    Flanking Genome Sequence: GT15060 - 5-prime edge 
    TCCTACTTTC TCCCTGTATG TAAAGATGAG AACAAAGTTT AACAAACTAA 
    AGATTCAATC TCCAAACATA CTCCTCATTG TTCAACTACT AGACTAATCG 
    AAACCCGAGT AAGAAAACAC TTCACTGAAG TCTTGTTTCG ACTCAACACA 
    ATGTAAGATC TTCTCCTCAT AAGAGACTTC AAAGCATGAT GGTACTGAAA 
    CAATTTTGCT AGCTTCTGGG TAGTCAATAA TGCCAAACAG TGAATAACCC 
    ATCTTCAGTT TTCTCATTTG TACGCGCTAA TTGCTCTTTG ATCGATATGC 
    TGGAGTGTGA CTTACTTTGC AGGGAAGAAG GTAAAGGAAT GAACCTGGTT 
    TTACTGCAAT TACTAGACTT GTCGAAACCC AAGTGAAAAA GCAGTTCACT 
    GAAGTCTTGT TTTGATTCAA CACAATGTAA GATCTTCTCC TGAGAGACTT 
    CAAAGCTTGA GGGTTGTGAA GGTAATGAAA AAAACCTGGT TTTACTGCAA 
    TTACTTGACT TGTTAAAAAG CCAAGTGAGA AAGCAGTTCA CTGAAGTCTT 
    GTTTTGATTC AACACAATGT AAGATCTTCT CCTGAGAGAC TTCAAAGCTT 
    GAGGGTTGTG AAACAATCTT CTTAGCTTCT AATGAGTGAG ACTGGTGAAT 
    ATTATCTTTA GTACGCACTA ATTGCCCT

AT4G04404.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G29340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04405.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 5.6e-50 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR