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GT15059

CSHL Arabidopsis genetrap mutant lines

Original: GT15059

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15059

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9954100 [Map]; Strand: c
      • AT1G28360.1 - [+] show detail - ERF domain protein 12
        Distance: 1360; Region: intergenic
      • AT1G28370.1 - [+] show detail - ERF domain protein 11
        Distance: 1869; Region: intergenic
    Flanking Genome Sequence: GT15059 - 3-prime edge 
    TATTTTACCG ACCATTACCG ACCGTTTTCT CCCTAGTACA CTTGATTCTT 
    CAACAAATTG GGTTCTGTTA TGTTGGTTTG GCTTGATTTC GTTCTTGGGT 
    TGAAATATAC TTAACCAATA ATCTAACTTC GTTGGTTTAA ACATTTCCGG 
    TATGGCTGGC TATATGCGCA TTATTATTTT TAATTGTTAC TGAACCAATA 
    ATCTAATTTA CTATGGCTAG AAGCATATTT GTATTATTGT GAGAATATTG 
    CGTGCCTATT TACCCCATGA ATTTACGCAA TAAGGCTAAT CTCTTCAAAA 
    ATTATTCCTT TAGCTCAAAA AAATTCAAGA G

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11680778 [Map]; Strand: c
      • AT1G32380.1 - [+] show detail - phosphoribosyl pyrophosphate (PRPP) synthase 2
        Distance: -974; Region: promoter
    Flanking Genome Sequence: GT15059 - 5-prime edge 
    CTTTCTCCCT GAAGTGACAG TTTAAAACCT CAAAACGTTA CCAAATGACA 
    ATACTTCTTC CGTAAGTTTC TTTTTTCTAA GCAAACATAG AAATTTAAAA 
    GAGCTATATG CTTTCAACAT ATCTAATGTT TTTGGATCAA ACACTCTCCA 
    ACCAGATATT ACTAAGGTGA GTAATAAAAT GCAAGCTGAC AGTTAGGTGA 
    ACGCCTCGGA AACAACTCCA ACTCCTTAAG CATCTCAAGT CTCTTGTTAG 
    GGTCCGTTGA TTCAGTGGAG ATAGTTGCCT TCTTTAAACA GTTTGCATTT 
    CTTAAGATAA ATGCTATAAC TTTTTTCTCT TCTTCTGCTC CTTCATAGTC 
    TACCAATTCA AGAGTTTCGA GACTCCATAT CACACATTCA GGGGCTGAAC 
    TCGGTTCCAT CCAGCACGAG CGATCACCAT CACAATCGAG CTATAAGTTG 
    ATGGGATAGA AGTACAGTGC ATTAGATCAA CATATATTAC TGATCGAAGG 
    AAACTGAATA AATTGGGACA TATTATATGC ACCTGTTCAA GTTTGAGAGC 
    TCGTAAATTA GGTGAATCTC TGAGAACACA CAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11680778 [Map]; Strand: c
      • AT1G32380.1 - [+] show detail - phosphoribosyl pyrophosphate (PRPP) synthase 2
        Distance: -974; Region: promoter
    Flanking Genome Sequence: GT15059 - 5-prime edge 
    CTTTCTCCCT GAAGTGACAG TTTAAAACCT CAAAACGTTA CCAAATGACA 
    ATACTTCTTC CGTAAGTTTC TTTTTTCTAA GCAAACATAG AAATTTAAAA 
    GAGCTATATG CTTTCAACAT ATCTAATGTT TTTGGATCAA ACACTCTCCA 
    ACCAGATATT ACTAAGGTGA GTAATAAAAT GCAAGCTGAC AGTTAGGTGA 
    ACGCCTCGGA AACAACTCCA ACTCCTTAAG CATCTCAAGT CTCTTGTTAG 
    GGTCCGTTGA TTCAGTGGAG ATAGTTGCCT TCTTTAAACA GTTTGCATTT 
    CTTAAGATAA ATGCTATAAC TTTTTTCTCT TCTTCTGCTC CTTCATAGTC 
    TACCAATTCA AGAGTTTCGA GACTCCATAT CACACATTCA GGGGCTGAAC 
    TCGGTTCCAT CCAGCACGAG CGATCACCAT CACAATCGAG CTATAAGTTG 
    ATGGGATAGA AGTACAGTGC ATTAGATCAA CATATATTAC TGATCGAAGG 
    AAACTGAATA AATTGGGACA TATTATATGC ACCTGTTCAA GTTTGAGAGC 
    TCGTAAATTA GGTGAATCTC TGAGAACACA CATAA

AT1G28360.1

Model type
Protein coding
Short Description
ERF domain protein 12
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description
ERF domain protein 12 (ERF12); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5550 Blast hits to 5447 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5541; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28370.1

Model type
Protein coding
Short Description
ERF domain protein 11
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description
ERF domain protein 11 (ERF11); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 6129 Blast hits to 5763 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32380.1

Model type
Protein coding
Short Description
phosphoribosyl pyrophosphate (PRPP) synthase 2
Curator Summary
Encodes a P-dependent phosphoribosyl pyrophosphate (PRPP) synthase.
Computational Description
phosphoribosyl pyrophosphate (PRPP) synthase 2 (PRS2); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G35390.2); Has 11410 Blast hits to 11162 proteins in 2771 species: Archae - 272; Bacteria - 6075; Metazoa - 636; Fungi - 714; Plants - 210; Viruses - 13; Other Eukaryotes - 3490 (source: NCBI BLink).
Link
InterPro Scan - TAIR