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GT15057

CSHL Arabidopsis genetrap mutant lines

Original: GT15057

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15057

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26155325 [Map]; Strand: c
      • AT1G69543.1 - [+] show detail
        Distance: 6544; Region: intergenic
      • AT1G69560.1 - [+] show detail - myb domain protein 105
        Distance: -2430; Region: intergenic
    Flanking Genome Sequence: GT15057 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTTAAA GTATAAAAAC 
    TTCTTAGAAA TTCTAGTTAG AAAGTTGTAA AAAATGTAGA ATGTGTCAAT 
    CATGTTCACT AGCTATTGCC TATGTTGGCT ATGTCCCTAT GTGCTCCAAA 
    ATGATCGATG TATAATTGAG CAATGTGCGT GTTTAGGTAT AGTATAATGA 
    GGAGCAGAGC ATGCACGTAC GTGTTGTTGA ATTGATGCAA CATGGTACGC 
    TAAAATCAGT TCGTGGGGTC GCATATTTGG AAATGAACCA CAGTAGACTC 
    GCAAAACATT TCTCTGTTGA TATGAATTGG ATCCTATGCA TTAATTTCTG 
    AATCTGTTTC CTTTTCCGAC ATTATATATT GTATATGTTC CTCATTTAAA 
    ACTGAAAATT CTATTCTAAT AATTCTATCC CCTACAGTTA TTGAAACTTC 
    ACCAAAAAAA TCAACACCTT ATTTTAATGG CTTTCTATAG ATGAAAAAAC 
    CCGAAAACTT GTAAAAATAA AATAAAAATA CTTGTTAACT TAAATAAGTA 
    GATAACATAT ACTTTTTTTT CTTTTCAAAT GATAACAAAA TAAAAGTGAA 
    GGTAATTGGG TTGGGTGTAG ATATCCTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26155325 [Map]; Strand: c
      • AT1G69543.1 - [+] show detail
        Distance: 6544; Region: intergenic
      • AT1G69560.1 - [+] show detail - myb domain protein 105
        Distance: -2430; Region: intergenic
    Flanking Genome Sequence: GT15057 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTTAAA GTATAAAAAC 
    TTCTTAGAAA TTCTAGTTAG AAAGTTGTAA AAAATGTAGA ATGTGTCAAT 
    CATGTTCACT AGCTATTGCC TATGTTGGCT ATGTCCCTAT GTGCTCCAAA 
    ATGATCGATG TATAATTGAG CAATGTGCGT GTTTAGGTAT AGTATAATGA 
    GGAGCAGAGC ATGCACGTAC GTGTTGTTGA ATTGATGCAA CATGGTACGC 
    TAAAATCAGT TCGTGGGGTC GCATATTTGG AAATGAACCA CAGTAGACTC 
    GCAAAACATT TCTCTGTTGA TATGAATTGG ATCCTATGCA TTAATTTCTG 
    AATCTGTTTC CTTTTCCGAC ATTATATATT GTATATGTTC CTCATTTAAA 
    ACTGAAAATT CTATTCTAAT AATTCTATCC CCTACAGTTA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26155157 [Map]; Strand: c
      • AT1G69543.1 - [+] show detail
        Distance: 6376; Region: intergenic
      • AT1G69560.1 - [+] show detail - myb domain protein 105
        Distance: -2598; Region: intergenic
    Flanking Genome Sequence: GT15057 - 5-prime edge 
    CTTTCTCCCT GCTTTAGTTA GAGTTTTCAA CTAGCCTTTC GCTAAAATCG 
    AGTTTATTAC GTTTTATTTG ATTGGATTCA ACCTTGTTTT GGTTTAGGAT 
    GATTCCGAAC CGACCATAAC CCTATACAAC ATGGGGGGAT TGGACATTAA 
    AACAGGAACA CAAGTGA

AT1G69543.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT1G74220
Link
InterPro Scan - TAIR

AT1G69560.1

Model type
Protein coding
Short Description
myb domain protein 105
Curator Summary
Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780).
Computational Description
myb domain protein 105 (MYB105); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 117 (TAIR:AT1G26780.2); Has 8910 Blast hits to 7943 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 941; Fungi - 606; Plants - 5396; Viruses - 6; Other Eukaryotes - 1961 (source: NCBI BLink).
Link
InterPro Scan - TAIR