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GT15033

CSHL Arabidopsis genetrap mutant lines

Original: GT15033

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15033

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21574048 [Map]; Strand: w
      • AT3G58260.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15033 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCTTCATG CCAGAGTCTG 
    GCCTACATGA AAAGTGTAGG ATTTAAGCTG GATTGGTTGG AGAAAAAACT 
    TGATGAGTTG TTTGAAAAGA AGAAGGAAGA AGCTGATAAG ATTCGGATGC 
    AAAACATTGA GGAAGAGCTC AAAGATTTGA GGCAGAAGTG CTCAAGCCTT 
    GAAGCTCTTT TGAAGAAGGA GAAGACAGGT GTTTTGGCCG CCAAAGCTCC 
    TTTCTTGTTT TTTAATAACG TTAACGATGA TGACCTTAAG TGGATCTTAC 
    GAGCGGTAAT GTACACCCTC ATCATGATGT TGTTCATTTC AATATAAATC 
    TCGTCAATGA TGCAAGGCTT TGTTGGATCT CTTCTATTTC TCTATGGACT 
    TCTGATATCA GGTTTTCTAT TTTGATAAGT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21574039 [Map]; Strand: w
      • AT3G58260.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT15033 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCTTCAT GCCAGAGTCT GGCCTACATG 
    AAAAGTGTAG GATTTAAGCT GGATTGGTTG GAGAAAAAAC TTGATGAGTT 
    GTTTGAAAAG AAGAAGGAAG AAGCTGATAA GATTCGGATG CAAAACATTG 
    AGGAAGAGCT CAAAGATTTG AGGCAGAAGT GCTCAAGCCT TGAAGCTCTT 
    TTGAAGAAGG AGAAGACAGG TGTTTTGGCC GCCAAAGCTC CTTTCTTGTT 
    TTTTAATAAC GTTAACGATG ATGACCTTAA GTGGATCTTA CGAGCGGTAA 
    TGTACACCCT CATCATGATG TTGTTCATTT CAATATAAAT CTCGTCAATG 
    ATGCAAGGCT TTGTTGGATC TCTTCTATTT CTCTATGGAC TTCTGATATC 
    AGGTTTTCTA TTTTGATAAG TTT

AT3G58260.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 1068 Blast hits to 958 proteins in 113 species: Archae - 2; Bacteria - 2; Metazoa - 237; Fungi - 51; Plants - 742; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR