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GT15028

CSHL Arabidopsis genetrap mutant lines

Original: GT15028

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15028

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5167869 [Map]; Strand: c
      • AT1G14990.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
      • AT1G14990.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
      • AT1G15000.1 - [+] show detail - serine carboxypeptidase-like 50
        Distance: -727; Region: promoter
    Flanking Genome Sequence: GT15028 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCCTGGAATA 
    TCCTGCTCTT GTTCTACACA ACATTCGAAT CAGTAACATT AAATCAAATT 
    AAACCTGAAG CAGAAACCAA GAGAAGAATC CAGAAATTGA AATCATCTGC 
    GAATTCCGAT ATTGAAAAGA AAGAACAACC AAAAGAAGCA AACTGAGATC 
    GGACGAAAGA CATTACGTGT TGTTTGTATA GAAGAATGTG AGGGCAGCAG 
    TGAAGCAGTA GAATCCGGCG TAAGAGACAG CCCGTCGTAG CTTCTGGATC 
    TTTATAACCT CTGAGCAAAC ATCCAAGATC ATCATCTTCA CACCTTCGGA 
    AACTCTTTCA GGTATTATAT CGAACACCTT GTGATCACTT TACCAAACAG 
    AGATGACGAG TAGAAGAAGC ATCTCACGAA ATTTGCAATT GACAAATTGT 
    AAACGCCTTG TATTGTCCAA CTTTTTATGG GCCTATCTGA CCTTTTTCTC 
    TTTTCGGCCC AATAAAACTT TT

AT1G14990.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14990.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR

AT1G15000.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 50
Computational Description
serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
Link
InterPro Scan - TAIR