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GT15026

CSHL Arabidopsis genetrap mutant lines

Original: GT15026

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15026

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12472967 [Map]; Strand: w
      • AT3G30790.1 - [+] show detail - transposable element gene
        Distance: -1104; Region: intergenic
      • AT3G30800.1 - [+] show detail - transposable element gene
        Distance: 3183; Region: intergenic
    Flanking Genome Sequence: GT15026 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCCTA 
    CCGACAAGAA AACAACATCA GCTACACAAT CCTATTTTCC CACGACCACA 
    TACTTCAACC AAATAATACA CATTTCAGAG AACTTACCAA CTTATATCTT 
    ACCTTCCATG ACATCGACAA AGCAACAACA GGTACTTTGG TCAATAACTT 
    GACAAATTTT ATAGAAGCTA CTATTCTCTC ATTTGGAACG GACAACCCAC 
    AACCACTCAA AGTCATCTTT GAAATCGAAG ATAACAGTCC AAATTCAACA 
    ACAAGACTTG ATGTGGAAGT CACTATACAA CACCTATCAA TTCTACAAAG 
    GCAAGCCACA AAAGATGAAG GAGGTGAATG CTCAATGTTT CTTGAGGAGC 
    TACATGGTGT TCAAAACATT AACAATCTAT CTTGAAATCA CAAATTTCAC 
    CATGAATGTA TTTCAACTTG GTTACATCAT AGAACAACAT GTTCTAATTG 
    TAGAACCCAA ATAGTGTAAC CTTCAATTTA GTTTCTTATT ATTCATGATT 
    AATAAAATAA TAATACTCAA GTGAACTTGA TCTACGATAT ACTCTCGAAA 
    CTATTAAACT AAGAACTTAC TTTTAAAAAG CAAAAGAGAA TCGAGACTTC 
    AGAACTTAAA GTGTTTTGTG TTTTT

AT3G30790.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 1.0e-149 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR

AT3G30800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 3.6e-27 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)
Link
InterPro Scan - TAIR