1. Home
  2. Mutant Lines
  3. GT15022

GT15022

CSHL Arabidopsis genetrap mutant lines

Original: GT15022

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15022

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19060371 [Map]; Strand: c
      • AT2G46430.2 - [+] show detail - cyclic nucleotide gated channel 3
        Distance: 0; Region: intron7 (CDS)
      • AT2G46430.1 - [+] show detail - cyclic nucleotide gated channel 3
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT15022 - 3-prime edge 
    CAGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTTTCAGGTG CCTTGGTTCC ATGCTATGGA TGATCGGTTA CTAGATGCTC 
    TATGTGCTCG TCTCAAAACG GTTCTTTATA CAGAGAAAAG TTACATTGTG 
    CGTGAAGGTG AACCAGTGGA GGATATGTTG GTTATAATGA GAGGAAATTT 
    AATCAGCACC ACTACTTATG GTGGCAAAAC TGGTTTCTCT AATTCTGTCG 
    ACTTAGTTGC TGGTGATTTC TGTGGAGATA TTCTCACTTG GGGATTAGAT 
    CCTCTCAGTT CCCAGTTCCC TATCTCTAGT AGAACCGTTC AAGCTTTGAC 
    AGAAGTCGAA GGCTTTGTTC TCTCAGCTGA TGATCTCAAG TTTGTCGCTA 
    CTCAGTATCG GACTCAGTAT CCCCGCCTTC ATCTCACTCG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19063812 [Map]; Strand: c
      • AT2G46440.1 - [+] show detail - cyclic nucleotide-gated channels
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT15022 - 5-prime edge 
    CTTTCTCCCT GGCCTGAACA AAACAAACAG TGAATTCAAG AGGAGTTGGT 
    TAAGTTATGA TGGGACAAAA TAAAAGGTTA CCCTTTTGAG AAACTTGAGA 
    TAAAGATAGC GTTTGGTTTC GAGTCTGAGG TATTTTGGAA GACTACGAAG 
    AAGAGCTTCC TCTTCGGTGC CTTTGGTTTC TCTCCATTTG TAATCTTCAA 
    ATCTCCTAAT ACGTTCCTTC AAATACTCTG GTATCCCCCG ATAGGACATC 
    CATTTTTCTG TGTCTCTCTT TTTCTCTTCC ATTTCATCCT CCCCCTCGAC 
    CAAAGATGAT TGCAAGTACT TCTGCGATCA CCAAAAACAA ACATCTATTA 
    AGAATCAGCT TTATGAGATC AAACTTTAGT TCTAAGGTAT GAACATTACC 
    TGAACGTTTC CAATGAGCAC AGCAAACAAG AGTAGACCAG AGACACATAT 
    GATGATAGCA AAGAAAATCT CCCCTGCAGA GTTGCTTGTC TCCAGGTTTT 
    GGCCCAAAGC ACTGTAGAGC GGATTAATCT ATCAAGTGGA TTGATATATG 
    TCTCACGGCA GAGAGTTTAG CATAATACAA TTTAGTACCT AATATTACGG 
    AGACCCCACC AAAAGCAATA GACGAATTTC CTGGGAAAAT CTTTTGGTTT 
    CACCTCTAGC

AT2G46430.1

Model type
Protein coding
Short Description
cyclic nucleotide gated channel 3
Curator Summary
cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance
Computational Description
cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 3204 Blast hits to 3078 proteins in 223 species: Archae - 0; Bacteria - 24; Metazoa - 1501; Fungi - 4; Plants - 972; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46430.2

Model type
Protein coding
Short Description
cyclic nucleotide gated channel 3
Curator Summary
cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance
Computational Description
cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46440.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channels
Curator Summary
Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.
Computational Description
cyclic nucleotide-gated channels (CNGC11); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 12 (TAIR:AT2G46450.1); Has 2962 Blast hits to 2888 proteins in 221 species: Archae - 0; Bacteria - 24; Metazoa - 1476; Fungi - 2; Plants - 940; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).
Link
InterPro Scan - TAIR