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GT15021

CSHL Arabidopsis genetrap mutant lines

Original: GT15021

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15021

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25890197 [Map]; Strand: c
      • AT5G64740.1 - [+] show detail - cellulose synthase 6
        Distance: 3503; Region: intergenic
      • AT5G64750.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1309; Region: intergenic
    Flanking Genome Sequence: GT15021 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    CTCGTGTATA ACAGGTAAAA ATAACAACTA CGTCAACTTG TGAGCACAAT 
    TGCTTAGATT GGTTAAAAAC AAAAGTCCAA CGATGCGTTT CGAGATTATC 
    CTCAAGTTAA CTCTCAACCA AAAAATAATA GAAAATCCAA AAGATATAAA 
    TATAATAATT ATTCTGCGTT CAGACTAGAA TCTACGAGTA CATATCTGCA 
    AGTTCTGAAA TCTGAACCAT CCTGAGCTTA ATTGCAAATA TGGACAACAT 
    TATGTTTTTC TTAACCAAAA AGTTTTTGTG CAGCCTCTAT TAGACTCGAT 
    TCGGGCGAAT AAGAAAACAA CTCTTATAGT TAAAAGAAAA ACACATCACA 
    AATCCTAAAA TCATATTTTC TTCTGAACAA TGCGTTTCTA TTTTTTTTCT 
    ATTTTCTTCT GAACAATGCG TTTCTATTAT TTTCTTCTGA AAAATCGAAA 
    A

AT5G64740.1

Model type
Protein coding
Short Description
cellulose synthase 6
Curator Summary
Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.
Computational Description
cellulose synthase 6 (CESA6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: cortical microtubule, transverse to long axis, Golgi apparatus, cellulose synthase complex, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 5 (TAIR:AT5G09870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64750.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.
Computational Description
ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR