1. Home
  2. Mutant Lines
  3. GT15015

GT15015

CSHL Arabidopsis genetrap mutant lines

Original: GT15015

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15015

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10954732 [Map]; Strand: c
      • AT4G20280.1 - [+] show detail - TBP-associated factor 11
        Distance: 0; Region: exon5 (3UTR)
      • AT4G20300.2 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -706; Region: promoter
      • AT4G20300.1 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -729; Region: promoter
    Flanking Genome Sequence: GT15015 - 3-prime edge 
    AATGAAACGG TAGAGGTATA AGACTGGGGA ATTTACCATG CTGCTCAAGG 
    ATAAGGGTCT ACGGCAGGTT TAAGCTGGCG AGATTTGCCT ATCAATCTCA 
    TCATAAAGGA GAACTTCTTT GGCTTCCCTG GTGGATCATA TTGTTCTTTG 
    ATGTTCTTAA CTTTGTGTGA CAACTTTTGT AGTAAATCAA TCTTTGGATA 
    CAGACCCTGA AATGGCTATC AGTCTTACGG TTTGGTTTTT ATTTGGTTTA 
    CGTTTCCAGT TTTCATTTTC AATACAAGAT CAATCTTTGA CTACAGACCA 
    CATGGCCTAA AAGTGGCAAT CCGGTTTACT AGGTTGGATT CGGTTTCATT 
    TCCGGTTTTA TAGAATTCGA AATCAAATAA AATCATTTGT AATCCGGTTT 
    ATTTGGTTAA ATTTGGCTAT ACCTAAAAAT TGGTTTTAGT ATTGATTCGT 
    TTTTGGTCGA ACATTACAAG AACTGGGTTT ATAAGTTCAA ATTCAAATTG 
    TGTATTTCTT CGGCGTGATT GAAAACCGTC GCGATCAGAA TTCGGTCTAC 
    TGTCAAAATT GGTACGGAGA CGTTTTGAAT CACACAAGTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10954633 [Map]; Strand: c
      • AT4G20280.1 - [+] show detail - TBP-associated factor 11
        Distance: 0; Region: exon5 (CDS)
      • AT4G20300.2 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -805; Region: promoter
      • AT4G20300.1 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -828; Region: promoter
    Flanking Genome Sequence: GT15015 - 5-prime edge 
    CTTTCTCCCT GGATATAAGT TCTCTTTTGG CTCTTGTTGA CTAGCGGAAA 
    AGGCGTGGAA CTGATCTTTT AGGCACTTTT CCTTCGAGCT TTAGTCTCCG 
    ATAAGACTCC CTGATATGAC AAGGTCTGAT AGGTCCTGAT TCTTTCCTTT 
    CCGCCATAAC AACTCGAGCT ACAGATAATG TATTGAGGTT CAGTAAATGA 
    GCTTTGTTGG CACATAAACA AAATCATTGG AAATTTTTGC ACTGGCTTAC 
    CTGTTTCAAC GAGTTCACCA ACGAACATCT TTGCAATACC ACACGCAACA 
    ATAATCATTG GCATACCAAT CTTCTGACTA CCAGTGACAC CTATCAATAA 
    CTGCATTAAC ATAAAAGCTA AATGGTTCAT ATTTGCAATG AAACAAAATT 
    AAGAATGTTG ATAACCACAA ATCATATAAC ATATATACCT TCTTCATCTG 
    TGGTCTTTGA AGTGCAGATC TCCTAAAAGA TTCATTTCCC ACTCGATCAG 
    ATCCTCAGTG AATTGCGATA ATATGGTTCT GAAGAATTCA ACAAACAATC 
    AATCATCAAA GAAACATGAA GAACAATCAA AATTCTACAA AGACTCACTG 
    CATTTTGGCC ATTTTAGCAG GATCAGAACT AGTTGGATAT TTAGTAAGCT 
    CAACATCCAT ATTCTCTTCC TCTTCTTCAT

AT4G20280.1

Model type
Protein coding
Short Description
TBP-associated factor 11
Curator Summary
Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).
Computational Description
TBP-associated factor 11 (TAF11); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11B (TAIR:AT1G20000.1); Has 444 Blast hits to 437 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 119; Plants - 66; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20300.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 587 Blast hits to 572 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 183; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20300.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 598 Blast hits to 583 proteins in 86 species: Archae - 0; Bacteria - 10; Metazoa - 190; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Link
InterPro Scan - TAIR