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GT15007

CSHL Arabidopsis genetrap mutant lines

Original: GT15007

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15007

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10954606 [Map]; Strand: w
      • AT4G20280.1 - [+] show detail - TBP-associated factor 11
        Distance: 0; Region: exon5 (CDS)
      • AT4G20300.2 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -832; Region: promoter
      • AT4G20300.1 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: -855; Region: promoter
    Flanking Genome Sequence: GT15007 - 3-prime edge 
    GAAAAGGCGT GGAACTGATC TTTTAGGCAC TTTTCCTTCG AGCTTTAGTC 
    TCCGATAAGA CTCCCTGATA TGACAAGGTC TGATAGGTCC TGATTCTTTC 
    CTTTCCGCCG TAACAACTCG AGCTACAGAT AATGTATTGA GGTTCAGTAA 
    ATGAGCTTTG TTGGCACATA AACAAAATCA TTGGAAATTT TTGCACTGGC 
    TTACCTGTTT CAACGAGTTC ACCAACGAAC ATCTTTGCAA TACCACAGGC 
    AACAATAATC ATTGG

AT4G20280.1

Model type
Protein coding
Short Description
TBP-associated factor 11
Curator Summary
Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).
Computational Description
TBP-associated factor 11 (TAF11); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11B (TAIR:AT1G20000.1); Has 444 Blast hits to 437 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 119; Plants - 66; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20300.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 587 Blast hits to 572 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 183; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20300.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 598 Blast hits to 583 proteins in 86 species: Archae - 0; Bacteria - 10; Metazoa - 190; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Link
InterPro Scan - TAIR