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GT14985

CSHL Arabidopsis genetrap mutant lines

Original: GT14985

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14985

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16535456 [Map]; Strand: c
      • AT4G34620.1 - [+] show detail - small subunit ribosomal protein 16
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT14985 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTGACT 
    GAGAGAAGCA AATGAATTAA GGATTGTAGC CTTATGCAAA TAGAGTTTTG 
    GACACAGAAT CAACAGAAAG CATCTCAATT TGTCACAATC TAAGCAATTA 
    GGCAGCATCA TTGTGGCAAG AACAAGTTTA TGACCTTGCA GAATACTAAA 
    GAGAATGAAT TAAGATGATT AAAAGACAAA CAAGAAAACA CATTCATGAG 
    GAATAATCAA TCATATGGAT AATGTCGAGA AAGAGACTCT TTAGTGTTTC 
    AGTCTTATCA AACAATCATG AGTTTCACAT CTAACTGGTG TCCTAAAATA 
    CTTGACACAA TTATACAAGC AAACAGGAAT ATGAAGATGA TAGAACAAGT 
    AAAAAAAACA TACTTGATTC TGTCGAATTT GAGGCTCACT CTATCCGCAT 
    CTTCTTTGCC TGAAGACGTA CAAGTAGATT CATGATAGCA GAGACATTAG 
    GAAGTGTTCA ATTTTACTGA GAATTGAGAA ATGTATATAG AGGAGAAATA 
    ACGAACCTTG GAGTGGATCA TAAAAGCCTA ACACCTCGAT TTGTTTACCG 
    TCCCTGCGCG ATTTTTCATC GGCGACAACT ACACGATAGA AGGGTCGGTG 
    TTTACAACAA GACGCGCGAG CCTTATCTTC ACCGTCATCT CTGCTTGGAA 
    ATTGAGGTCT G

AT4G34620.1

Model type
Protein coding
Short Description
small subunit ribosomal protein 16
Curator Summary
Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype
Computational Description
small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink).
Link
InterPro Scan - TAIR