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GT14983

CSHL Arabidopsis genetrap mutant lines

Original: GT14983

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14983

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14295397 [Map]; Strand: c
      • AT2G33790.1 - [+] show detail - arabinogalactan protein 30
        Distance: -126; Region: promoter
    Flanking Genome Sequence: GT14983 - 3-prime edge
    GGTAGAGTAT TTTACCGACC GTTACCGACC GCTTTGCATC GCTCTTTTCG 
    ATCGATGAAG ACCCGTTAAA GATTTAGATT TAGATCTCCT AACAGGTTTT
    AATACTTGAA GCAAGAAACT CGATATTAAT TTGTAGTACA GTCACTTCCC
    GTTTCTTTTT TAATAGAATA AATAATAGAA GAAATCAAAC GAGCTTCATG
    CTCACTCGAC GATGGCCCCT TTATTCATCT CACTCGA

AT2G33790.1

Model type
Protein coding
Short Description
arabinogalactan protein 30
Curator Summary
pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family
Computational Description
arabinogalactan protein 30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 4773 Blast hits to 1945 proteins in 284 species: Archae - 10; Bacteria - 247; Metazoa - 746; Fungi - 274; Plants - 1194; Viruses - 386; Other Eukaryotes - 1916 (source: NCBI BLink).
Link
InterPro Scan - TAIR