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GT14979

CSHL Arabidopsis genetrap mutant lines

Original: GT14979

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14979

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14295396 [Map]; Strand: c
      • AT2G33790.1 - [+] show detail - arabinogalactan protein 30
        Distance: -125; Region: promoter
    Flanking Genome Sequence: GT14979 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTTCC 
    GATCGATGTA GTCCCGTTAA AGATTTAGAT TTAGATCTCC TAACAGGTTT 
    TAATACTTGA AGCAAGAAAC TCGATATTAA TTTGTAGTAC AGTCACTTCC 
    CGTTTCTTTT TTAATAGAAT AAATAATAGA AGAAATCAAA CGAGCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14295339 [Map]; Strand: c
      • AT2G33790.1 - [+] show detail - arabinogalactan protein 30
        Distance: -68; Region: promoter
    Flanking Genome Sequence: GT14979 - 5-prime edge 
    CCTACTTTCT CCCTGATCGG AACTTCTCGC CAGTTGTGTA CATGTGCTGT 
    GTATGCCTCT ACATCTCTAG TATCTATATG AATTATACAA AATTGTAGCC 
    CGATATCTCC TATAAATACA CCCAAGTCAC ATCAACCCAA AGTCACACAC 
    ACAAAGAAAA ACAAAAGAAC AAAGATGGGA ATCATTGGTA AGAGTGTTTC 
    TCTAACTCTC TTTGCACTTT TGTGCTTCAC TTCCTCTGTT TTCACCTTAG 
    GAGTGAATCA ACCTGGTTCA TCAGATCCCT TCCATAGCCT TCCCCAACAC 
    CTTCCCCTAC CTCCGATTAC ATTACCATCA CTCCCACCGG CCAAAGCTCC 
    GATCAAACTA CCAACACTCC CACCGACCAA AGCTCCAATC AAACTACCAG 
    CCTACCCACC AGCCAAAGCT CCGATCAAGC TACCAACTCT CCCACCAGCC 
    AAAGCTCCGA TTAAGTTACC AACTCTCCCA CCGATCAAAC CTCCAGTTCT 
    CCCACCAGTT TACCCTCCTA AGTACAACAA GACCCTAGTG GCAGTTAGAG 
    GTGTGGTCTA CTGCAAAGCT TGCAAGTACG CGGGCGTCAA CAACGTCCAA 
    GGCGCTAAAC CCGTTAAAGG TACTAACTTA TATACATTCA TGATATATAT 
    TATCCTAAAA CTCACTCGAA CCCTTAATAT ACGCACATGT GGTATGTCCG 
    TATGTGAAAA GTTCTTCAAT CCGATGCATG CATACTTTTT TT

AT2G33790.1

Model type
Protein coding
Short Description
arabinogalactan protein 30
Curator Summary
pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family
Computational Description
arabinogalactan protein 30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 4773 Blast hits to 1945 proteins in 284 species: Archae - 10; Bacteria - 247; Metazoa - 746; Fungi - 274; Plants - 1194; Viruses - 386; Other Eukaryotes - 1916 (source: NCBI BLink).
Link
InterPro Scan - TAIR