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GT14956

CSHL Arabidopsis genetrap mutant lines

Original: GT14956

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14956

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26026327 [Map]; Strand: c
      • AT1G69220.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -156; Region: promoter
      • AT1G69220.2 - [+] show detail - Protein kinase superfamily protein
        Distance: -156; Region: promoter
      • AT1G69230.2 - [+] show detail - SPIRAL1-like2
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT14956 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAAAAC 
    AATACCGCTT TTCAACAACC TGACTTACTT AACTATCGAG ACTAACGAGG 
    ATGTAGGATG GGAATCATTG TCGAATATAC TCGAGAATTG TCCAAATCTA 
    GAAACTATCA TCTTCAAAGT ACCAGCACAT ATCCTTTTCC TTCATCAGCT 
    GCTACATTAT TTCCAAACAC ATGTAAATTC TGAAAAGCTA TTTCCTTGAT 
    TATACTTCAG GGACTTCATC TTCACTCGAC AAAANNNANG AGGTAATCAA 
    GAGACGAGCC ACCTCCTGGA GCTGAGTGAA CCTTGGTCGA TGGTCGGTCC 
    TGCGAACAAC AACCAAACAA GATGTTTTAG TAACTGTACC ATAAGTTTTA 
    GACGATTATT GCGTTGTTAG CACAAAGCAA AACCCATCAG TCTATTTGAT 
    CTTCTTTCAT TTTCAGACAA CTAATCTAAG AAAAGTAAAG ATACAGATGT 
    TTTTGCTATC CGATAACCAG CACACAGGAC TCGATTCAGC GAAAGAATTA 
    AAGACATACC GTGATGAAAT TGCCTGTGTT TTGTCCTTCT GCACGCATGT 
    AATTGTTTGC AGAGTTGCTA TTGAGACCAG CAGGAACTTG

AT1G69220.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a putative serine/threonine kinase (SIK1).
Computational Description
SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69220.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a putative serine/threonine kinase (SIK1).
Computational Description
SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 135073 Blast hits to 131353 proteins in 4820 species: Archae - 174; Bacteria - 17099; Metazoa - 50056; Fungi - 12728; Plants - 33057; Viruses - 559; Other Eukaryotes - 21400 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69230.2

Model type
Protein coding
Short Description
SPIRAL1-like2
Curator Summary
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
Computational Description
SPIRAL1-like2 (SP1L2); BEST Arabidopsis thaliana protein match is: SPIRAL1-like1 (TAIR:AT1G26355.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR