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GT14855

CSHL Arabidopsis genetrap mutant lines

Original: GT14855

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14855

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20864414 [Map]; Strand: c
      • AT1G55820.1 - [+] show detail - Kinase-related protein of unknown function (DUF1296)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14855 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    GGCGGCTCCT CTAGGGTTTC GATTCCTTAC CATCTCCGCA AAACCCTTCA 
    GAAAATCAGA GAGTATACCG GAAAGCAGCA CTCGGATGAG GATATCTTTG 
    CCGTCTATAA GGATTCCTTC AATGATCCTC ATGAGACCGC TCAGAAGCTC 
    CTCTTCTTAG GTACGAATCA TCATCTATGT CTCTTTCTCA GCTTAGGGTT 
    TGTTTTGTTT TGATGGAGCG TGACTTGCGT GACTCTTGGG TTTGCCCTCC 
    TTAGATTTGA ATTGTACGAT AGGGTTTGTA TCTGTTTTCG AAGATCATGT 
    GATGTGCTTT TGGTTCGCTA CTGTTTTGAG TTTCTTTTTG TTGCCTTGAG 
    CTATTCGGTT ATCGAATCTT TGTTTCCTGG TGTGTGAATA TGCAGATTTT 
    ATGCCTAAAG TCATAGTTCC TTACCATTTA ACTGGAAAGG TACTTAGAAT 
    TATTGAAAGA GATCTTGTTT TCTTTTTGTA ACTTTACTTT GGGGATGAGT 
    TCGTACCTTT CAAGGATTCT GGTGGGCGTG ATCTGGATTA TTAAGTAGGT 
    ACTATTTGTC TTATGTGTCT ACATGTCAAA ACATTCAGAT TTTGGGTCAG 
    CCTCGTGAAA ACTCTTGTAT TTTAGTTTGG CTCAACTTTG GTCTTTATGA 
    GCCATTTTCT TATGTACAAT GTTAATTTTG AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20864337 [Map]; Strand: c
      • AT1G55820.1 - [+] show detail - Kinase-related protein of unknown function (DUF1296)
        Distance: -2; Region: promoter
    Flanking Genome Sequence: GT14855 - 5-prime edge 
    GGAGGAGCTC ATGGTTCTTG TTAAGGGAGA GAAGCAGAAG CGGGAGGAGA 
    GAGAAATTGA GAGAGCAATT GAAATTGGAA GCGCGAGTCC CTCCGTATTT 
    ATTTATTTAC TTACCAAGAT AATAATAATG TACCGCTTCA CTGTCGGTAA 
    CTTTTATACG CTCACGTCAC TTCATTGCAC ACCAAAAGAC TCTTTAAAGT 
    TTTACATTTT GTATGACTTC AACAGTCACC CAATTATAGA GAGACACGTG 
    GACGATGACC CAAAAACTGT GAATACGTTC ACACTCATTT TGTTTTGATA 
    TTACCGTATA CATATATGTG TGAATCCGAT CATAAAAGTA CTACGTATAA 
    CAGTTGAAAC AAAAGAAATC AAAATTTTCG AGGGAGGCAA GGCAAGCTCG 
    CACTCTCTCA CTCATCATCG GTTCCAAAAT AGCGGTCTCC AAACTCGCCC 
    ATACCAGGAA CAACTCGGAA CTCGTCGTTT AAACCGAGTT CTATCTCTGA 
    AGTCACAATC TTTATCCTTG GGAACTTTTT GCACACCACA TTTACTCCTT 
    GAGGTGCCTA TACCATACGT AACCATACAT TCATTTTGAC TGTTTAGGCT 
    ATGCAGATAA GTTGCAAAAA GGTTTTGGTT TGTTAAACTT ATAAGTTGCA 
    AAAAGGTTTT GGTTTGTTAA ACTTACAGAT ATCAAATTGA GAAATATGAT 
    GTTGGATTCA GGCACGCCTT TACTTATGAG CAGTCTTATC GCTTGCACCG 
    CCGAGTTTCC TGCGATACAA ACATGCTTTT GTTATGTTTC TAT

AT1G55820.1

Model type
Protein coding
Short Description
Kinase-related protein of unknown function (DUF1296)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GBF-interacting protein 1 (TAIR:AT3G13222.1); Has 1074 Blast hits to 540 proteins in 140 species: Archae - 0; Bacteria - 57; Metazoa - 222; Fungi - 108; Plants - 188; Viruses - 12; Other Eukaryotes - 487 (source: NCBI BLink).
Link
InterPro Scan - TAIR