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GT14847

CSHL Arabidopsis genetrap mutant lines

Original: GT14847

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14847

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28867597 [Map]; Strand: w
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G76878.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14847 - 3-prime edge 
    AGAAGCTGCA ATGTTGTTGT TGCTGAGGAA TTTGTTCCTC TCTCTATATA 
    AAGCATCAAG CTGGTGAAAG TAAGGGCAAG TCTTGGAATC TTCGGGACGT 
    TTCTTGTTGC TCTCTTAGAC TTTCTTGAAG TATTTGTTTA TGTTTTCCCA 
    TTTCTCTTTG CATCTCTTTG AGTTCCTGTA GAATCCTAAC CTTCTCATTC 
    CCGCTGATAT CTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28867966 [Map]; Strand: w
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (3UTR)
      • AT1G76878.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14847 - 5-prime edge 
    CTTTCTCCCT GAACACAAGA CGACGAATAA TCTGTAATGA TGATGATTCG 
    AGTTCGAACC GGTTTGGTGG TGAAAGATTA GTAATCTTTT TTTAAGTTTT 
    GATACAGAAC ATGAGAATTT AAATATTGGA GGGTTTTTTT TTTTTTTTTT 
    TTCCCCCCCG GGTTTTTAAG GGCCCCCGGA AAAGATTTTT TTTTTTTAAA 
    ACCAAAATAA AAAAACCGGG GGTTTTATTT TTTTTCCCCG GGGAAAAAAA 
    AAAAAAAAAG GTTAAAAAGG GGGGCCCAGG GGGGGTTTTC CAAACCCAAA 
    AAAAAAAAAA AAAAAGGGTT TTTTTTTTTT TTTCCTAAAA AAGGGGGCCC 
    CCCCCCCCCC

AT1G76878.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G76880
Link
InterPro Scan - TAIR

AT1G76880.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 4096 Blast hits to 3293 proteins in 319 species: Archae - 0; Bacteria - 232; Metazoa - 1014; Fungi - 378; Plants - 799; Viruses - 55; Other Eukaryotes - 1618 (source: NCBI BLink).
Link
InterPro Scan - TAIR