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GT14768

CSHL Arabidopsis genetrap mutant lines

Original: GT14768

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14768

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21398047 [Map]; Strand: c
      • AT3G57765.1 - [+] show detail - U2.3; snRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G57770.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14768 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGGG 
    GGAGGTAATC AAGCCATTGG CTTGGAGTGT AAGATTGAAG ATCGCTAAGG 
    AGATTGCAGA TGCTGTAACG TATCTGCATA CTGAATTCCC TAGGACTATA 
    ATCCATAGGG ATTTAAAGCT TACAAATATT TTCTTGGACG AGAATTGGAC 
    CGCTAAGCTC TCTTCTTTCA GCCTCAGCAT ACCAATTCCA GAGGGAGAGT 
    TGGGGGTAGA AGATATCGTT TGCGGGACAC AAGGCTTTGG AGAGCCCCAC 
    TATATGGTAA CAGGTTTTGT CACTGAGAAT GTTGACATCT ATAGCTTTGG 
    ATTCATCATG CTAAGTCTTT TGACAGGAAA ACATGGATTC TATCAAGAAC 
    CGGCTAATGG TGACAGTTAT AACATGATTC TGTTGCCTGA TTATGTTGAG 
    AAGTGTTTGG GGCGAGGACC GTTAGCTAAA CTGATAGACC CATCGATGTT 
    AAACAGTACC GATGACGACA TTCCTGATCA TTCAAAACTG CAAATGGAAG 
    CATTTGTTAA TCTTGCATTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21397962 [Map]; Strand: c
      • AT3G57765.1 - [+] show detail - U2.3; snRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G57770.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14768 - 5-prime edge 
    TATATAGGCA AGAGCTCCCT TTTCTTCCTA TTCACACACG AGAACCGGAC 
    GAGGAAACTC TAGACAACAC CCCAAGAGCT TGAGAACATT CTTATGGCTG 
    CTCATCATCG ATGAAACCGC AATATCACGG TAAAAGTTGT CAGGGTCAAA 
    GTTAAAGGGT TCACCTTTAT AGTACTTGAT CAGCACGGCT CTGTTTTCAA 
    TCGTACCTTT GTACCACACG AATCTGTCTA CACCGATTGC ATAGCTCCAG 
    TCGAAGTTGT TTGTAGCTTC AAGGATTTGG TGAGAAGAAA ACGTACGGAT 
    GGGATTGTAT TTACCTCCTG ACGATGCAAT GAGTAAAGTC CCACATCGAC 
    AAGTTAGAGA GCCGTGGTCA TAAGCATTGT AGTATAAATA AGAAGCTCCG 
    CCCATCGTCC AAATCATACC TTTCTCGGCC TTTTGGCTAA GATCAAGTGT 
    AGTATC

AT3G57765.1

Model type
Small nuclear RNA
Short Description
U2.3; snRNA
Curator Summary
encodes a small nuclear RNA, which is a part of small nuclear ribonuclear particle (snRNP) and is involved in RNA processing such as splicing and polyadenylation.
Computational Description
gi|17662|emb|X06474.1|ATU23 Arabidopsis thaliana U2 RNA gene (U2.3)
Link
InterPro Scan - TAIR

AT3G57770.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, stem; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G57700.1); Has 31980 Blast hits to 31686 proteins in 859 species: Archae - 12; Bacteria - 542; Metazoa - 6797; Fungi - 843; Plants - 21680; Viruses - 85; Other Eukaryotes - 2021 (source: NCBI BLink).
Link
InterPro Scan - TAIR