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GT14201

CSHL Arabidopsis genetrap mutant lines

Original: GT14201

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14201

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4694012 [Map]; Strand: w
      • AT5G14550.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G14550.2 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -280; Region: promoter
      • AT5G14560.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: 0; Region: exon1 (CDS)
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: -614; Region: promoter
    Flanking Genome Sequence: GT14201 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    CCCGATCACC AAACCTTTCC GGTAATTACT CTCCCTTGCG TTCGACGCCA 
    TCTTCCTTGG AGTTCTCTTC AATCAACCGG TAAATCTTCC ACTGATTTTG 
    AAGAAGATTC TTCCATGTTC GATCTGGTTC GNCTCCAGAG ATCAAGAGTT 
    GAATTGCCTC GAAACAGCTC TAGTTTCACC AGAGACGCGC GACCGATAGA 
    AATAAAGAGA CTCGAAGCTG CGTGTACCGG AGACGAATGG CGGGAAAATT 
    GACTTGAGCG CGATTTTCTG TGTGGATCCA AAATGAAGAA GAAGGTGTCT 
    CAGCAGAAGT TACTGTACAG ATGGAAGAGG AAGGTATACG CCACGTTGAT 
    GTTCGCTTTC TGCTTTGGGA CTTTCGTATT TATACAAGCT CGTTTCGCAT 
    CTATACAAGC TCGTTTCAAT CGAATCTCTG CGTCTCTCGA TTCGCTTAAA 
    AAGCCTCGTC TAGATCAGAG ACCACAGATT GCCTTCCTCT TCATTGGCCC 
    GGAATCGACT CCCTCTCGAG TTTGTCTGGG ATGCTTTCTT TAAGGTATAT 
    ACTCTTCTCT TCCTCCTCCT CCTCTAATTG GGATCAGAAA CACTGACTCT 
    CGTATTTGAG CTTGGTCCAT AATGACATGT GCTTCTGCAG GGTGAGGATG 
    GAAAGTTCTC AATATATGTT CATTCTAGAC CTGGAT

AT5G14550.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 574 Blast hits to 572 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14550.2

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 576 Blast hits to 576 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 546; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14560.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14565.1

Model type
miRNA
Short Description
MIR398C; miRNA
Curator Summary
Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.
Link
InterPro Scan - TAIR