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Mutant Lines
GT14157

GT14157

CSHL Arabidopsis genetrap mutant lines

Original: GT14157

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14157

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 11754594 [Map]; Strand: w
- AT2G27500.1 - [+] show detail - Glycosyl hydrolase superfamily protein
  Distance: -566; Region: promoter
- AT2G27500.3 - [+] show detail - Glycosyl hydrolase superfamily protein
  Distance: -827; Region: promoter
- AT2G27500.2 - [+] show detail - Glycosyl hydrolase superfamily protein
  Distance: -566; Region: promoter

AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG AAGGTAGAGA 
AGTAGAACAG CTTGGATTTA CATTATTTGT ATCCATAAAT CTAACTAAAC 
CTACTACTTA TTCCTCCTCT TTGATTAACA TACATGTAAT TTAAAGAAAC 
CAGCCAAATT CGTTATATAT AGTTGAGCTG TAAAGGGCAT AAAGTAAAAT 
CAAAATCATA CATATTTAAC TACACTTTTA GGCAATTGAT AAAGCACATT 
ATTTTATATC TATAATAAGT TTATAACCAA AAATAATAGT AAAACTCGAT 
GTCGATAGTT TAACGACTTA CGGGTGTACT AAGTAAACAT CCAAAAAAAA 
AAGTTTTTAT TTCTTCAAAG GATCGATGGA AAAAAAAAAA AAAAAATTTT 
TAAAAAAAAA TTTTTTTTTG AAAAAAAAAA ATCCCAAAGG AATTCCCATT 
TTTTGGGGGG TTTTTTTTTT TGGGGGTCCC TTTTTTTTTT TTTTTTGGGC 
CCAAAAAAAA AATTT

5 prime edge [+] show sequence

Chromosome: 3; Position: 84684 [Map]; Strand: w
- AT3G01270.1 - [+] show detail - Pectate lyase family protein
  Distance: 0; Region: exon1 (CDS)
- AT3G01280.1 - [+] show detail - voltage dependent anion channel 1
  Distance: -917; Region: promoter

GTTTACCCAA TACTCATCGG ACTCCTCAGC AACATTGGCT CGTATGGTCG 
GAATCAAACT GGCAATACCT ATCACACACA CTAATTTGAA AAGCCTAGCC 
GTCTCCATTT TATTTGATTA CCCCTATCTT TTACGGAAAA TAATATCTTT 
TTTATTTTTT AAAAAGGGGT AATCTTTTTA TATATCGAAA TATATGTGGA 
GAACTGCTAA GCTTTAAACA TAGCTTTAGG TCGTTATTTC TGTTTGACCT 
AAAGCCCTTT TTTGGTAGAT GAATCGTAT

AT2G27500.1

Model type: Protein coding
Short Description: Glycosyl hydrolase superfamily protein
Computational Description: Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 2143 Blast hits to 2127 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 12; Plants - 2120; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G27500.2

Model type: Protein coding
Short Description: Glycosyl hydrolase superfamily protein
Computational Description: Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G27500.3

Model type: Protein coding
Short Description: Glycosyl hydrolase superfamily protein
Computational Description: Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01270.1

Model type: Protein coding
Short Description: Pectate lyase family protein
Computational Description: Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT5G15110.1); Has 1587 Blast hits to 1580 proteins in 266 species: Archae - 0; Bacteria - 700; Metazoa - 0; Fungi - 174; Plants - 701; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01280.1

Model type: Protein coding
Short Description: voltage dependent anion channel 1
Curator Summary: Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description: voltage dependent anion channel 1 (VDAC1); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 3 (TAIR:AT5G15090.2); Has 888 Blast hits to 888 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 146; Plants - 300; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR