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GT13631

CSHL Arabidopsis genetrap mutant lines

Original: GT13631

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13631

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10532093 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: -136; Region: promoter
    Flanking Genome Sequence: GT13631 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC GATTCATAAT TAAGCAAGAA 
    GATATTTTAA AACTATTTTG TGATAATTAA CATTGTGATA ATATCCAAAC 
    AGCATATTAT TATAAAATTG CATAACAATA TATTCAGATC TAAATTACCT 
    GAAACATTAG TCAAGCAATT TAAGCAAAAA TAAATTAATA ATAAATATAT 
    ATATACCTCA ACACGAACGA CACATAAAGC AATAACATAT TGACACAACG 
    AATCACCTTA AAACCAAAAT TCAATAGAGA AGAAGGATCG AAGGAGAACG 
    AGAAAATTGG AAGCAAGAAA GAAAGGATTC TCTGATATTG TAGAGTGAAG 
    GTTATCAATG AATTAGTAAA ATTATAATGG ATTCTCTAAT ATTGTATAGT 
    GAAGAAAATC GGAAAAACAA TCCTCTATTT AAAGAAAATT AGGATGACGT 
    GTTGTTGTAT ACAAGAAAAA TTATGGTCGT TAGATCCATC TCTACCGTCC 
    AGTTTTAAAT CATTTCAAAA TCTTAGATTT TCTTCCTTTT AATATTTTAA 
    TGTATCTTAG ACTACACATT AATGGTTTAA AACTCTTTCC ATATAAAATA 
    ATTAATATAA ATGTAAAATA TATTTACTCT CCCATTTCCA AATTTTTATA 
    TATACGTAG

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR