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GT13563

CSHL Arabidopsis genetrap mutant lines

Original: GT13563

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13563

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 905906 [Map]; Strand: w
      • AT4G02070.2 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: exon1 (5UTR)
      • AT4G02070.1 - [+] show detail - MUTS homolog 6
        Distance: -173; Region: promoter
    Flanking Genome Sequence: GT13563 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCTC 
    TAGTAATAAT ACTCGCTCTC TCTCTGTGCC ATCTCGAAAA TCGAAATATT 
    CATGCCGTTA AAAGCTTATG GAGTGAGTGA GATATTGCAA CGACGTAAAT 
    GGGCTTTGCT CTGTATTAAT GGGCTTAAAA GTATAATAAT ATGGCCCATT 
    AATTCTTAAA CCGATCCAGA ACCGATCTGT TATGTTACCA AACCGAAAAT 
    TGTTCTGTTT TCCAAAATTG TCATAAAAAT CCCAAAATTC CACTTTTAGA 
    ATTTTTTTGA AAATATGTTA GCATGGTACT TAGGGCTTGA TCGGTTCTCC 
    CTCTACCACC CGCAAACGCA GCGTTTGCGG TTGGTAGCGG TTGTTAGCGA 
    TTGACATCAA TCATAGAAAC TGCTAGATAT CGCTTTAGAC CGCTCGAAAT 
    CGTCAGTTTT CAAAAGCTCC TTCCCGCAAG CGTTTGCGGT TGCGGGCGGT 
    AGCGGTTAGG TTAAAAAAAA AAAAAAACTT TTTTTAAATA AAAAAAAAAA 
    ATGGGGCCTC CCCCCCACCC CCAAACCCCT AAAATAAAAA AACCCAACCC 
    TTTAAAAATT TTCCCTTTTA TAAAAAACCC CAATCCAATA TTTGGAACCC 
    CTTTCCCTTA AATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 905955 [Map]; Strand: w
      • AT4G02070.2 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: exon1 (5UTR)
      • AT4G02070.1 - [+] show detail - MUTS homolog 6
        Distance: -124; Region: promoter
    Flanking Genome Sequence: GT13563 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GACTAGAGCG TTGTTTCCCG CCAATTAGCA 
    ACTTTCGCCG GCGTATTTTC CCGGTGAAAA ATTCCCGCGC AATCTCTTCA 
    CTTCATAATA AGCTTCTCTC ATCAATCTCG CTCTCTTCGC CGACTGTTTC 
    ACTCCCCTTC TCTCTCACTC TCTGTGCGCT TTATTCCACT CTCCGATGGC 
    TCCGTCTCGC CGACAGATCA GCGGAAGATC TCCGTTGGTG AACCAGCAGC 
    GTCAAATCAC CTCCTTCTTT GGGAAATCTG CTTCATCATC TTCATCT

AT4G02070.1

Model type
Protein coding
Short Description
MUTS homolog 6
Curator Summary
encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.
Computational Description
MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 29702 Blast hits to 21889 proteins in 2967 species: Archae - 234; Bacteria - 11721; Metazoa - 3243; Fungi - 2118; Plants - 3658; Viruses - 802; Other Eukaryotes - 7926 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02070.2

Model type
Protein coding
Short Description
MUTS homolog 6
Curator Summary
encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.
Computational Description
MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1).
Link
InterPro Scan - TAIR