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GT13466

CSHL Arabidopsis genetrap mutant lines

Original: GT13466

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13466

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12337284 [Map]; Strand: w
      • AT2G28760.1 - [+] show detail - UDP-XYL synthase 6
        Distance: 0; Region: intron7 (CDS)
      • AT2G28760.2 - [+] show detail - UDP-XYL synthase 6
        Distance: 0; Region: intron7 (CDS)
      • AT2G28760.3 - [+] show detail - UDP-XYL synthase 6
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: GT13466 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCT CAGGTGAAAC 
    TAATCTCCAT CAAGTTCTTG AATTTATCTT TTTCTTTTTT TTTGTTTGAA 
    AAAAAGGCCC GAGTATTTTT GGGGGGGCCC CGAAAGACAT TTTAGGGCCT 
    TTTGGGTGAA AAAAAAGGTC CCGGGTCTCC GGGGGAAAAG CTTTGCGGGG 
    GAAAAAAGGG GGGAAACAAA CCCCCCTTTT CTTTTTTTTA CCCAAAAGGG 
    GGGGGGGGGC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15286343 [Map]; Strand: c
      • AT2G36420.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -155; Region: promoter
    Flanking Genome Sequence: GT13466 - 5-prime edge 
    CGAAGGGAAG CTTTTTGCTC TTTTCTTATA AGAAGAGAGA GAGAGAGAGA 
    TTTTGGTGAA GGATGAGGAA CAGTTGAAGA CAAAGGGTGA GACATTGGAT 
    AAAGAAGAGT CAATGCTTTG GATTTGGCTA CTTCCTAGCA TCTTGAAAAA 
    TAGGAAAAAA ATAAGAAAAG TAAAGTTTTC GTTTTATATT CTTTCTTTCT 
    TCATATTGGA TTATAATTGA CGACATGTGT CTTATGCAAC GGTAATTTTG 
    TTTGTTAAAA GAAAGTTTAG TTGACATATT ATTATCAGAG TGGGCCTCAA 
    AGACTCCTGA AAAATAGAGT TTACGTGTCA AATTTAAAGA GTCTATTTGT 
    AGTCGTGTAT ATTTTTATTT ATCCATTT

AT2G28760.1

Model type
Protein coding
Short Description
UDP-XYL synthase 6
Computational Description
UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28760.2

Model type
Protein coding
Short Description
UDP-XYL synthase 6
Computational Description
UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28760.3

Model type
Protein coding
Short Description
UDP-XYL synthase 6
Computational Description
UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36420.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03670.1); Has 10588 Blast hits to 6606 proteins in 440 species: Archae - 8; Bacteria - 365; Metazoa - 4146; Fungi - 1198; Plants - 483; Viruses - 212; Other Eukaryotes - 4176 (source: NCBI BLink).
Link
InterPro Scan - TAIR