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GT13405

CSHL Arabidopsis genetrap mutant lines

Original: GT13405

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13405

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26750038 [Map]; Strand: w
      • AT5G67010.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -422; Region: promoter
      • AT5G67020.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13405 - 5-prime edge 
    CGACGTTGAC CGGAGAATGA CCGGTTTGAC TCCGGCTCAC GCAGCCGGTC 
    TCCGCCGTCT CTCAGCTCGC GCCGCCGCTC CATCCACTCC TACGATCAGA 
    AACAGCCTTC AATCTTTCTC CCCTTTCGCC GATAAAGTAA TCAATCATCT 
    TAAAAATTCA GGTATCAAAA TCCAACCAGG TCTCTCCGAC ACCGAGTTTG 
    CCCGAGTCGA AGCCGAGTTT GGTTTCACCT TCCCACCGGA CCTCCGTGTT 
    ATCCTCTCCG CCGGTCTCTC CGTCGGCGCA GGATTCCCAG ACTGGCGTTC 
    TCCCGGAGCT CGTCTCCACC TCCGTGCCAT GATCGATTTA CCAGTCGCCG 
    CTGTATCGTT CCAAATCGCT AAAAACAGTC TCTGGTGCAA ATCTTGGGGC 
    TTTAAACCAC CCGACCCGGA AAAATCTTTA AGGGTCGCGA GAAACGCCTT 
    AAAAAGAGCT CCTTTACTGA TTCCCATCTT TGATCACTGC TACATTCCTT 
    GTAACCCGTC TTTAGCTGGT AATCCGGTTT TC

AT5G67010.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G20350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67020.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR