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GT13350

CSHL Arabidopsis genetrap mutant lines

Original: GT13350

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13350

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 80863 [Map]; Strand: c
      • AT5G01200.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 2320; Region: intergenic
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: 3444; Region: intergenic
    Flanking Genome Sequence: GT13350 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTATAA 
    TGCATGTAAC TCACTGTTCA TATTCGTGAG TTTTCACTTT TTTTTTCTTT 
    TTCTCATGAG AAAAACTTTT TTGTTGTTGC TGGTTGGCTA TCATAAAAAG 
    TACTATAATC TACGTTATTG GTATATCTTT GTACTCGTTA TAACTACAAT 
    TTAAAAAAAA AAAAAAAAAA CCCCCTTTTT TTTCCAAAAA AAAAAACCTT 
    TTTAAATCAA AAAAAAAAGG GACCCCCAAT TTTTTGGGTT TTGGGGAAAA 
    AAAAAACCTT TTTTTTTATT TAAGTTTGGG GAAAGGGGTT AAAAATTGCC 
    CCCCCCCTTA AATGGGAAAA AAACGGGCAA ACCCCCCCTT TTGGGGAAAT 
    TTTTAAAAGG GCTTGAAACG GTTTTTAATA AAAAAAGGGG ACCTTTTTTC 
    CCCCCCTTTC TTTTTTATTT TAAAAAAAAA ACCCCCCCCC CGCGGGGAAA 
    ACCCTTTTTT TCTAAAAAAA GGAAAAAAAA AATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 80806 [Map]; Strand: c
      • AT5G01200.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 2263; Region: intergenic
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: 3501; Region: intergenic
    Flanking Genome Sequence: GT13350 - 5-prime edge 
    ATCCTACTTT CTCCCTGATA TAGGTATCGC TTATTGGTTT TTCGGGACAT 
    AATGTGTGAA TGTAGTTTAT CAAATGGAAC TGCTTCGTGC CAGAGCTTTG 
    TTCACGTGAA ATGTTGTTTC AGACCTTGTT CATCATATCG GTTTTATGCA 
    TCCACCGACA AGTTGCCTAG AAAGATTTTG GAGTTCAGAT TTTAAGAACA 
    TCATTTACGG ATATTCTTGC AACATATATA CACACTTCCG GGATTATAGA 
    TTCAATTTAG TAGTTTTCAT GTATAAATGT GAATAGATGT TGTCTTTGTG 
    ATCATAAAAT TATCAACTGG GAATGGTGCA GCTTAGTGGT AAGAAATAAT 
    ACTTTTTAAC TTCCCACTAA TCAGATATTT TGGAGTAAGC AATACATGCA 
    TATACCTTTT TCATTAATTA ATCAATATTG ATTTAACACC AACTTACTTA 
    TTTAATGTCA AGCTAATCAT TACATGACCC ATAATGCATG CTTGTGACCC 
    CTAATTCCCA CTCATTAAGT ACATGGTACA TATGTCGTTA TAGATTTATT 
    AATCTCTATA CTCAAATTAA TCAATGTCAA CCTTTGTAAA TCTTGGTTAA 
    CTCCACATCT CTTCTCTAAT CTGAAATTTG GGATATAAT

AT5G01200.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT2G38090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR