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GT13287

CSHL Arabidopsis genetrap mutant lines

Original: GT13287

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13287

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5529385 [Map]; Strand: c
      • AT5G16810.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G16820.1 - [+] show detail - heat shock factor 3
        Distance: -888; Region: promoter
      • AT5G16820.2 - [+] show detail - heat shock factor 3
        Distance: -945; Region: promoter
    Flanking Genome Sequence: GT13287 - 5-prime edge 
    TGCTTTTGTT AGTGTATTTG AATTGGGATA CATTGACCTT TCTTATGATT 
    ATTGTGCATC TTTAGCTAGA TTATGCTACG TTTGTTGGTC TAGTTTTACT 
    CTTTTATCTG CCGCTGTGTT CTACTTCGTT TACTTAGCTT TTCACCACTT 
    CTATACTCCT AGTTATACAG GGCTGCAGTC AGGATCTGAC TTTGAATATA 
    CGTCTGATGA TATTGGGCGA TTAAAATCTC AAGATATTGG AGAAGGTGCC 
    GTTAAGATCA GGTGCACTTT TGGCTTTGTG TAGACAATTT ATTAGATGGT 
    AATATATTTG GTCAAGTTAA AAATGTATTA GCCACAGCAG TTTGTATGCA 
    GACTATATCA AGGACGAATA TCTCAGGGTC CATTTCGAGG AACGCCTGTC 
    GTCTTTAAGG TGATTCTGCA TGTTTTGTCA ATCTTGTTTC TTCATCTCAC 
    TCGA

AT5G16810.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); Has 87 Blast hits to 87 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 19; Plants - 57; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G16820.1

Model type
Protein coding
Short Description
heat shock factor 3
Curator Summary
Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.
Computational Description
heat shock factor 3 (HSF3); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G16820.2

Model type
Protein coding
Short Description
heat shock factor 3
Curator Summary
Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.
Computational Description
heat shock factor 3 (HSF3); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).
Link
InterPro Scan - TAIR