F29629

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29629

Determination of introduced cDNA(s)

  • RAFL04-10-I16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-10-I16 - Resource: pda00328

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-10-I16 - full reading 
    ACTTCCTTCT CTTGAAGCCG GAAACCTTAA GGTTTTATAT CTGGGAAAAA 
    ACTCGCATCC GCTTCAATGA CTAAGGGAAC GGGAAGTTTC GGAAAGAGAA 
    GAAACAAGAG TCACACACTC TGTGTCAGAT GTGGCCGTCG CAGTTTCCAC 
    ATCCAGAAGA GTCGTTGCTC TGCTTGTGCT TATCCCGCCG CTCGCAAGAG 
    GACTTACAAC TGGAGTGTGA AGGCAATCCG TAGAAAGACT ACTGGAACTG 
    GAAGGATGAG GTATCTTCGC AATGTGCCTC GCAGGTTCAA GACCGGTTTC 
    AGAGAGGGTA CCGAAGCCAA GCCAAGGAAC AAGGGAGTTG CTTCATCAGC 
    TTAAACTTGT TTTTGAGCAT CAAGGGAGAG AGAATTCTGA GTTTGTTGTT 
    CACAAGATTA CTACTCTTAA GTGTCTGATT ATGACTATCT TTTTGTGTGG 
    TCTTTGCGTT TTTAAAGTTT TGGACATGGA TGGATTTCAA TTTGCAAGTC 
    TTTTAATTCT CTTTATTCTA TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G52300.1 [+] show detail - Zinc-binding ribosomal protein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L37e 1.3e-57
    HMMPfam Ribosomal protein L37e 8.8e-26
    PatternScan Ribosomal protein L37e, conserved site 0
    superfamily Ribosomal protein, zinc-binding domain 3.9e-23
    Gene3D Ribosomal protein L37ae/L37e, N-terminal domain 2.3e-21
    BlastProDom Ribosomal protein L37e 4e-18

    See the detailed result >

    AT1G52300.1

    Model type
    Protein coding
    Short Description
    Zinc-binding ribosomal protein family protein
    Computational Description
    Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1); Has 991 Blast hits to 991 proteins in 346 species: Archae - 293; Bacteria - 0; Metazoa - 303; Fungi - 141; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR