F29342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29342

Determination of introduced cDNA(s)

RAFL09-97-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-J24 - Resource: pda09136

full reading [+] show sequence

GAGTTTATGA TTTTGGTTTC TGAATCACCA ATGGCGATTC TCTCTCTACG 
ATCTTCGAGC TCATTGCCGC TTATTTGTTC CACAATTTCT CCTCTGTGCT 
CGAAACCCAT GTTGTCTCAG TTACCATCGA ATTTCTCATC GTCGATTGCT 
TCTGTTCCTG TCACCAAATT AAAATCCAGT TACAGTTCCT CCGTTTCACC 
GATTAGTAGG CCTCGTGTGG TTTCCGCGAG AGCTGCCACT GAGTCCTTCA 
CTGATTACAG AGAAGATATC GGTGAGATAC TCGGCGATGT CTCTATCTTT 
ACTGCTTCAG GCCAACGCGT GCAATTCAGT GATCTCTGGG ATCAGAAAGA 
TGGAATTGCT GCCGTTGTAC TCTTGAGGCA TTTCGGATGC GTTTGCTGTT 
GGGAACTTGC TACTGCTTTG AAAGAGGCTA AACCGAGATT TGATGCGGCT 
GGTGTTAAAT TGATAGCTGT TGGAGTTGGA ACTCCTGACA AGGCTCGTAT 
ACTTGCAACT CGGTTACCTT TTCCCATGGA ATGTCTTTAT GCGGATCCTG 
AACGCAAGGC ATATGATGTT CTTGGTTTAT ACTTCGGTTT GGGCCGCACT 
TTCTTCAACC CAGCTAGCAC CAAGGTCTTC TCAAGATTTA GCGAGATTCG 
AGAAGCAACA AAAAATTACA CCATAGAAGC CACTCCTGAA GACAGAAGCA 
GTGTGTTGCA ACAGGGAGGT ACGTTTGTGT TCAGAGGCAA GAAATTATTG 
TACGGTCGAA AAGACGAAGG CACGGGAGAT CATCCATCTC TGGATGATGT 
CATTAATGTC TGCTGCAAAG CCACTGTTGC TTGAAACATA TGGGATCAAA 
GTCTCTCTGG TTTGTCCTCA TACTTAAAAA TCACTGTATA TTTGTAGCTA 
TGAAATAATG TCTATATTTC TTTAAGCTTT GGAAAAAGTA TCAACACTAA 
GAAGTTAGAG CAACATATGT CCAAGTCCAG TCTCTCTCAC CGCTCATGTA 
GATTTTTGTA AGATGTCGAC AATTCATTGA AACCACACAA GTCTTTTCTA 
ATGTAATGCA AGACAAGTGT TTGGTTTGTT ATTAGGATAA AATTTGTCTT 
TTTCACTAGT GCATAGAAAA TGTGTTTGTA TTTATTTGAA CTCTGCACTA 
ACATAACTGG TGGATATCAT CACATTTTTA TAATATAAAG TTTATTATAT 
C

Gene models with high sequence identity

AT5G65840.1 [+] show detail - Thioredoxin superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	4.4e-06
Gene3D	Thioredoxin fold	0.00018
superfamily	Thioredoxin-like fold	3e-08

See the detailed result >

AT5G65840.1

Model type: Protein coding
Short Description: Thioredoxin superfamily protein
Computational Description: Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G37240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR