F27708

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27708

Determination of introduced cDNA(s)

RAFL09-51-A07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-51-A07 - Resource: pda06474

full reading [+] show sequence

AACAAACACA AAAACCTCAC AACCACTAAA CAACACACAA AAATGGCGTT 
TGTATTAATG AATAACACAA ACGCGTTTCT TGTAACGCTA CTATTACTAT 
CCCTTTCTTA CATTCCATTG TCTTTTTCCA CAATCCAACA AGACTTCGTG 
ATGTGTCTAG TCGACAACTC CGACGCTTCC TTTCCAATGG ACTCATCGTT 
CTTCACTCAC GACCTAAACG CCTCTTCCTT TAAACTCGCC TTAGAGACGT 
CAGCTCAAAA TCTCCGTTAC TTGATGCCTT CAAATCCTAA GCCAGAGTTC 
ATTTTCGAGC CGCTTTACGA AACGCACGTT CAGGCCGCCG TTCTTTGCGC 
CAAGAAGCTG AAGCTTCACT TGCGGTTAAG AAGCGGTGGT CATGACTACG 
AAGGCCTCTC TTACGTCTCG GAGATGGAAA CGGCGTTTGT GATCGTCGAC 
TTGTCCAAGC TTAGACAGAT CAGTGTTGAT ATAGAAAGTA ACAGCGCGTG 
GGTTCACGCT GGTGCTTCTA TTGGAGAGGT TTATTACAGG ATCCAAGAGA 
AAAGCAAAAT CCACGGTTTT CCGGCGGGTT TATGCACCAG CCTAGGCATC 
GGCGGTCACA TAATCGGCGG AGCCTATGGT TCAATGATGC GTAAGTTTGG 
TCTCGGAGCT GATAACGTCC TCGATGCTAG GATCGTTGAC GCTGACGGCA 
AAATCTTGAA TCGCGCGGCG ATGGGAGAAG ACGTTTTCTG GGCGATTCGA 
GGAGGTGGAG GAGGAAGCTT CGGCGTAATA CTTGCCTGGA AAATAAAGCT 
CGTTCCGGTG CCAGAGATTG TTACGGTGTT TACCGTCACG AGGACGCTTG 
AGCAAGACGG AACTAAGCTT TTGTACAAGT GGCAACAAGT CGCTGATAAG 
CTCGACGAAG ATCTCTTTAT CCGTGTGATT ATTCAGCCGA CGAGCAAAAC 
TCCGAAGAGC AAAGAAAGAA CTATCTCGAC TTCGTACCAA GGCCAATTTC 
TCGGCGACGC TAATCGTTTG TTGCAGGTGA TGCAAAGGAG TTTCCCACAG 
CTTGGACTAA CGAAGAAAGA TTGTTTAGAG ACAAGCTGGA TCAAATCGGT 
GATGTACATT GCAGGTTTTC CAAGCACTGC CCCATCAGAA GCTTTACTCG 
ATGGGAAATC GTTGTTCAAG AATTACTTCA AAGCCAAGTC AGACTATGTG 
GAAGAGCCAA TTCCAGTAGA GGGATTAGAA GGGTTGTGGG AGAAGCTTCT 
AGAAGAGGAC TCACCATTGA CTATATGGAA TCCTTATGGA GGAATGATGG 
CAAAAATTCC CGAGACAGAG ACACCTTTCC CACATAGGAG TGGGACATTG 
TTCAAGATAC AATGGCTGAC TTTGTGGCAA GATGGGAAAA CAAGCGAGGC 
GAAGCATATG GGGTGGATGA GGGAAATGTA TAGTTACATG GAGCAGTATG 
TATCGAAAAG CCCGAGATCC GCGTACGTGA ACTATAGAGA TCTTGATTTG 
GGGATGAATG GTAAAGGGAG TGATGCAAGA GAATGGGGGA ATAGGTATTT 
CAAGGGTAAT TTTGAAAGGT TGGTGGAGAT TAAAGCTAAG TTTGATCCTG 
AGAATTTCTT TAGACATGAA CAAAGTATTC CTACAGAACT TGAGTGAATT 
TGGAGTTAGA CAAGAATAAG AGTGTGGTTT AAGATTTCTC TTAGGAAAGA 
CTTGTTACTT GTGTTTTTGT GCTTTTAAAC ATGGCCAACA CACTTGTATT 
TCAAAATTGT TATCCAATCT AATCCCTTAT GAGGTCTTAG AAGTAATGGC 
AAATTTGGCT AAACCAAATC AAATCATATT TGCCTATAAA TGATGATAGT 
TTGGTTTAAT GGCAAACTCC CTATTGTTCC ACC

Gene models with high sequence identity

AT1G30760.1 [+] show detail - FAD-binding Berberine family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	FAD linked oxidase, N-terminal	1.5e-26
HMMPfam	Berberine/berberine-like	3.2e-25
HMMPanther	D-LACTATE DEHYDROGENASE	4.8e-07
superfamily	FAD-binding, type 2	6.3e-48
ProfileScan	FAD-binding, type 2	17.574

See the detailed result >

AT1G30760.1

Model type: Protein coding
Short Description: FAD-binding Berberine family protein
Computational Description: FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT2G34790.1); Has 5139 Blast hits to 5066 proteins in 829 species: Archae - 62; Bacteria - 2468; Metazoa - 28; Fungi - 1653; Plants - 688; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).
Link: InterPro Scan - TAIR