F26543

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26543

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26543

Determination of introduced cDNA(s)

  • RAFL09-85-M04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-85-M04 - Resource: pda06874

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-85-M04 - full reading 
    AAGAATTGTC TTCACGCTTC CGCGAATCGT TAAGCTTCAC AATTTCAAGC 
    GAAGAGGATC AAAAAATCAA TTTTTTTGGA GAAGAACCAG AAATCACAAA 
    ACCCTAGAGG GCTCTCTTCA AATCAACCAT TAAAACCGCC AATTCCGTTA 
    TGACAAAGAA GAGAAAGCTC GAATCTGAAT CCAACGAAAC GTCAGAGCCG 
    ACGGAGAAGC AGCAGCAGCA ATGTGAAAAA GAGGATCCGG AAATCAGAAA 
    TGTTGATAAT CAAAGAGACG ACGACGAACA AGTAGTAGAG CAAGACACAC 
    TAAAGGAGAT GCACGAAGAG GAAGCTAAAG GTGAAGATAA CATAGAAGCG 
    GAGACGTCGT CCGGATCTGG GAATCAAGGA AATGAGGATG ATGACGAAGA 
    AGAACCTATT GAGGATCTAT TGGAACCGTT TTCAAAGGAT CAACTTTTGA 
    TTCTTCTCAA GGAAGCTGCA GAGAGACATC GCGATGTAGC TAATCGAATC 
    CGGATTGTGG CGGATGAAGA TCTTGTTCAT CGTAAGATCT TCGTTCACGG 
    GCTTGGATGG GATACTAAAG CTGATTCACT TATCGACGCT TTTAAACAGT 
    ACGGAGAGAT TGAAGATTGC AAATGTGTGG TTGATAAGGT ATCTGGGCAA 
    TCTAAAGGTT ATGGCTTTAT CCTCTTTAAG TCAAGGTCTG GTGCTCGTAA 
    CGCTCTTAAG CAGCCTCAGA AGAAGATTGG AACTCGTATG ACTGCGTGCC 
    AGCTGGCGTC TATAGGACCT GTTCAGGGGA ACCCTGTTGT GGCTCCTGCT 
    CAGCATTTCA ATCCTGAGAA TGTTCAGAGG AAGATTTATG TCAGTAACGT 
    TAGTGCAGAC ATTGATCCGC AGAAGTTGCT GGAGTTTTTC TCAAGGTTTG 
    GGGAGATAGA AGAAGGTCCT TTGGGGCTTG ATAAAGCTAC TGGGAGACCT 
    AAAGGTTTCG CTTTGTTTGT CTATAGATCC CTAGAAAGTG CCAAGAAGGC 
    ATTGGAGGAG CCACACAAGA CTTTTGAAGG CCATGTCTTG CATTGCCACA 
    AAGCAAATGA TGGGCCAAAA CAGGTTAAGC AACATCAACA TAACCATAAC 
    TCTCACAATC AAAATTCCCG TTACCAAAGG AACGACAACA ATGGTTATGG 
    TGCCCCTGGA GGCCATGGAC ATTTCATAGC TGGTAATAAC CAAGCTGTGC 
    AGGCGTTTAA TCCGGCCATT GGCCAGGCCC TCACAGCTTT GCTGGCATCT 
    CAGGGTGCTG GGTTGGGTTT AAACCAAGCA TTTGGGCAGG CTTTGTTGGG 
    GACATTAGGG ACAGCTAGCC CAGGAGCTGT AGGTGGAATG CCAAGTGGCT 
    ATGGTACTCA AGCAAATATC TCACCTGGGG TCTATCCTGG GTACGGTGCT 
    CAAGCCGGGT ACCAGGGCGG TTATCAGACT CAGCAACCTG GTCAGGGCGG 
    TGCGGGAAGA GGGCAGCATG GTGCTGGGTA TGGTGGTCCT TACATGGGTC 
    GTTAGATTAG CCACTCAGGT AATTTAAGAG CAAGCTGAAC GGTCAACACT 
    TACGCCCAAC AAAAATCTAT GGGGTACCAA ATATTTGAAT GCCACCTATC 
    TGCTTTTTCT TTTATATATA CTGAAAAGTG AAAAGGGATG AATCTATGAA 
    TTGGTAGCTT TATAACTAAA GAACGAATTA AGCAAAAGTT GTTTTCTTGT 
    TTAACCC

    Gene models with high sequence identity

    1. AT2G41060.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 3.5e-19
    HMMSmart RNA recognition motif, RNP-1 2.4e-17
    HMMPfam RNA recognition motif, RNP-1 5.6e-15
    HMMPfam RNA recognition motif, RNP-1 1.2e-12
    HMMPanther RNA-BINDING PROTEIN-RELATED 8.7e-221
    HMMPanther RNA-BINDING PROTEIN 8.7e-221
    Gene3D Nucleotide-binding, alpha-beta plait 1e-17
    Gene3D Nucleotide-binding, alpha-beta plait 4.4e-17
    superfamily RNA-binding domain, RBD 2.2e-20
    superfamily RNA-binding domain, RBD 3.2e-20
    ProfileScan RNA recognition motif, RNP-1 14.078
    ProfileScan RNA recognition motif, RNP-1 13.84

    See the detailed result >

    AT2G41060.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1-associated protein 2A (TAIR:AT3G56860.5); Has 20258 Blast hits to 14290 proteins in 711 species: Archae - 0; Bacteria - 976; Metazoa - 9998; Fungi - 2289; Plants - 4483; Viruses - 115; Other Eukaryotes - 2397 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR