F26529

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26529

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26529

Determination of introduced cDNA(s)

RAFL04-13-O04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-O04 - Resource: pda00411

full reading [+] show sequence

ATCAGAATCT GGAACCTGGA TCAGATCTAG TCAGGGGTCA GATCGGAGAG 
CCGGCAATAT AATGGCAGCG GCGAGACGAT TACGGACGCT CCAATCTCAG 
CCGGAGAACA AGGTCTGTGT CGATTGCTCC CAGAAGAATC CACAATGGGC 
ATCGATTTCA TATGGAATCT TCATGTGCTT GGAATGCTCC GGTAAGCACC 
GTGGTTTAGG TGTTCACATC TCATTCGTCA GATCCGTCAC CATGGATTCA 
TGGTCCGAGA TCCAGATCAA GAAAATGGAC GCTGGAGGCA ACGAGCGTCT 
CAACAATTTT CTCGCTCAGT ACGGGATCTC GAAAGAGACT GATATCATCT 
CCAAGTACAA TTCCAACGCC GCGTCTGTGT ATCGAGATCG GATCCAAGCT 
TTAGCTGAGG GAAGACAATG GAGAGATCCG CCGATTGTTA AGGAATCGGT 
TGGTGGTGGA TTGATGAATA AGAAGCCTCC GTTGTCTCAA GGCGGTGGTA 
GAGATTCTGG TAATGGTGGA TGGGATAATT GGGATAACGA TGATTCGTTT 
AGATCTACGG ATATGAGGAG GAATCAATCG GCGGGTGATT TTAGGTCATC 
GGGAGGTCGT GGTGCTCCGG CGAAGTCGAA ATCGTCTGAG GATATATATT 
CACGGTCTCA GCTGGAGGCG TCGGCGGCGA ATAAGGAGAG TTTCTTTGCG 
AAAAGGATGG CTGAGAATGA GTCTAAGCCT GAGGGACTTC CTCCTTCACA 
AGGTGGTAAG TATGTTGGGT TTGGATCTAG TCCAGGTCCA GCTCCGAGAA 
GCAATCAACA GAGTGGTGGT GGTGATGTTT TCTCTGTTAT GTCTGAGGGT 
TTTGGAAGAT TGTCTCTTGT TGCTGCATCA GCTGCAAATG TTGTTCAGAC 
TGGAACCATG GAGTTTACTT CCAAGGTCAA AGAAGGTGGC TTAGATCAGA 
CGGTCAGTGA GACTGTTAAT GTTGTTGCGA GTAAGACAAC AGAGATAGGA 
CAGAGGACAT GGGGGATCAT GAAAGGAGTG ATGGCAATTG CCTCACAAAA 
GGTTGAAGAG TTCACTAAAG AAGAAGCATC AACTTGGAAT CAACAGAATA 
AAACTGAGGG CAACGGTTAC TACCAGAACT CTGGGATTGG AAACAAAACA 
GCAAATTCAT CTTTTGGAGG ATCACAATCA TCATCAAGTG GTCACAACAA 
CAGTTATCGT AACTCGAATT CTTGGGATGA CTGGGGAGAA GAGAACAATA 
GCAAAAAGGA AGCAGCACCA AAGGTGTCGA CTTCTAATGA TGATGACGAC 
GGCGGTTGGG CTGGTTGGGA TGATAATGAT GCTAAAGATG ATGATTTCTA 
TTATCAGCCT GCAAGCGATA AGAAATCTGT AGGTCACAAT GGGAAATCAG 
ACACTGCTTG GACCGGTGGA GGTTTTCTCT AACGGTGTTA CAGGATAATG 
GTGAATGAAG TTTGTACAAT TAAGGAATAG CAGAGCCTGT GGTCTTCTCG 
TGCTCTGTCA CAAGAGAGAG CAGAGTGGTC ATCTCAACCA TTAAGCCACC 
ACTGGTCTTT CTTTTCACAT ATCAATTGCT TGGCGTTCAA TCAAATCGAT 
CGTCACTATT TGTTCTTCTA CAATATATAT AGTTTTTTTT TTATTTGTAC 
AAGTTTCACA GTCACAGAGG ATTGCTTGCT AAACTATTCG GGTTAGTCTT 
CAGCTCTTTT TTTGAGATTC AAACTTTTAT TTTTCTTGAA ATTTGTAATG 
ATCACAAAAG ACAAATTTTC CGTTTTATTG TCTTCTTTCA CAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

AT2G37550.1 [+] show detail - ARF-GAP domain 7
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Arf GTPase activating protein	6.1e-43
ProfileScan	Arf GTPase activating protein	26.142
superfamily	Arf GTPase activating protein	4.8e-38
FPrintScan	Arf GTPase activating protein	2.2e-23
FPrintScan	Arf GTPase activating protein	2.2e-23
FPrintScan	Arf GTPase activating protein	2.2e-23
HMMPanther	ARF GTPASE-ACTIVATING PROTEIN	9.3e-73
HMMPanther	CENTAURIN/ARF	9.3e-73
HMMPfam	Arf GTPase activating protein	4e-35

See the detailed result >

AT2G37550.1

Model type: Protein coding
Short Description: ARF-GAP domain 7
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description: ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 3753 Blast hits to 3670 proteins in 253 species: Archae - 0; Bacteria - 30; Metazoa - 1888; Fungi - 664; Plants - 561; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
Link: InterPro Scan - TAIR