F26439

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26439

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26439

Determination of introduced cDNA(s)

RAFL06-85-A11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-85-A11 - Resource: pda07737

full reading [+] show sequence

CTTTGACGCG TAATTGTGAT CCTATATATA CATAACACTA CCGCAACTTC 
AGCAACCTCT AAATCATTCG TCTCCTAAAA TTTTCCAATC TCAAAATCCC 
AAAAGAACAA AATCGAATGG TGTCAACAAA TCCCCCTGTT CTTCCAATTT 
CCACCACCGC AACAGACACC ACCAATCAGC CTCCGATTGT AACCGCTGTG 
GTGGAATCGC AACCTCCAGT CGTCCGTGCA TTTGTCAACG GTGTGACCGA 
GACGGTCTGT GGTGGTCTAT CTCGTAGCCG TCCGTGGTCA GAGCTCCTCG 
ATCGATCCGC TTTCACAAAG CCTGACTCTC TCTCCGAGGC CGGGACGCGA 
TTCCGGAAAA ATTCCTCTTA TTTCAGGGTG AATTACGTTT GCATTGTCGC 
TCTGATCCTT GGTTTCTCTC TTCTCGCCCA CCCATTCTCT CATCCTCCTC 
CTATGTCTCG CCGCTTCCTG GCTCTTCCTC TACCTCTTCC GTCCATCAGA 
TCGTCCTCTT ATCCTCTTCG GCCGATCTTT CTCCGAATAC GAAACTCTCG 
GTGGCCTAAT CCTCTCCACG ATCGCAGTGA TCTTCTTCAC AAGCGTCGGA 
TCTGTATTGA TATCCGCTCT CATGATCGGA ATAGCAACAA TCTGTGTCCA 
TGGCGCCTTT AGAGCTCCCG ATGATCTCTT CCTCGACGAA CAAGATCATG 
CCGCCTCCGG ATTCCTCTCA TTCATCGGTG TTCCCGCGAT CCCCTCTGTA 
GCACCCTCTG CCTCCTCAGC GGCTTCCCCC GTGTAAATTA TAGTTCTCAG 
AATCTGGCGT GTTTAGAGAT TTGAAGGTGG AGATTGTTGC AATGT

Gene models with high sequence identity

AT5G01640.1 [+] show detail - prenylated RAB acceptor 1.B5
E-value: 0; Score: 99.76

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Prenylated rab acceptor PRA1	1.3e-26
HMMPfam	Prenylated rab acceptor PRA1	2.4e-20
HMMPanther	PRENYLATED RAB ACCEPTOR 1-RELATED	2.5e-16
HMMPanther	PRENYLATED RAB ACCEPTOR 1-RELATED	8.8e-28

See the detailed result >

AT5G01640.1

Model type: Protein coding
Short Description: prenylated RAB acceptor 1.B5
Computational Description: prenylated RAB acceptor 1.B5 (PRA1.B5); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B4 (TAIR:AT2G38360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR