F26431

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26431

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26431

Determination of introduced cDNA(s)

  • RAFL16-80-C04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-80-C04 - Resource: pda10277

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-80-C04 - full reading 
    TTATCTTCAG ATTGTTCCAG AGATTCATAA AGAAGTAGAA AATGCGAAGG 
    AGGATTTATT GGTTGTTGTC CCTGATGAAC ATTCTGAAAC TGATGATCAT 
    CATCATATTA AAGATTTTTC AGAGAGATCA GATCATCGAT TTTATCTGAG 
    AAACAAACAT GAGAACCCCA AAAAACGTCG TATCCAGGTC TTAAGTAGTG 
    ATGATGAATC GGAGGAGTTT ACAAGAGAAG TTCCTTCAGT TACTCGAAAA 
    GGTACCAAGA GAAGAAGAAG AGACGAGAAG ATGAGTAATA AGATGCGTAA 
    GCTACAGCAA CTCGTACCTA ATTGTCACAA GACGGACAAG GTTTCGGTTC 
    TCGACAAGAC CATAGAGTAT ATGAAAAACC TTCAACTTCA ACTTCAGATG 
    ATGTCAACAG TGGGGGTGAA TCCTTATTTT CTTCCGGCGA CATTAGGATT 
    TGGAATGCAC AACCACATGC TGACGGCAAT GGCTTCGGCT CACGGCCTAA 
    ATCCGGCGAA TCACATGATG CCATCGCCGC TAATTCCGGC GTTAAATTGG 
    CCATTACCAC CGTTTACTAA TATTTCATTC CCACATTCAT CTAGTCAATC 
    TCTATTTCTT ACAACATCAT CACCAGCTTC TTCTCCTCAG TCTCTTCACG 
    GTTTGGTTCC TTATTTCCCA AGTTTCTTGG ATTTTTCTTC CCATGCGATG 
    AGAAGACTAT GATAAGTAAG TAGCTCGATA AAAGTTTATG TGAAATGATC 
    GTTGACTAAT TAAGAGAGAA AAGAGTTCCA AATTAGGACA GTTTGTGTGA 
    ACCATTTGTG TCATATACTT TTTTTTCCGG GTGGTTTTGT ATATTAATAA 
    TAATCAATAA GTTAAAACTT TTTGT

    Gene models with high sequence identity

    1. AT1G02340.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-loop-helix DNA-binding domain 2.4e-08
    HMMPanther BRAIN-MUSCLE-ARNT-LIKE TRANSCRIPTION FACTOR 2 0.00032
    HMMPanther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS 0.00032
    HMMPfam Helix-loop-helix DNA-binding domain 1e-07
    ProfileScan Helix-loop-helix DNA-binding domain 12.125
    superfamily Helix-loop-helix DNA-binding 1.1e-11

    See the detailed result >

    AT1G02340.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.
    Computational Description
    LONG HYPOCOTYL IN FAR-RED (HFR1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2); Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 1707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR