F25828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25828

Determination of introduced cDNA(s)

  • RAFL04-16-J12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-J12 - Resource: pda07178

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-J12 - full reading 
    AATCACCAAA GAAAGAAGTA CAAAATGTTT AACTATGTGA TTATTCTTCC 
    TTTAGCTCTC TTCCTCTTGG CTTACAAATT CTTCTTTACA TCTAAAAAGC 
    AGCGTTACTA TCTCCCTCCC TCTCCATCTT ACTCTCTCCC AATCCTCGGC 
    CACCACCTCC TCATCAAACC GCCGGTTCAC CGTCTCTTCC ACCGCCTTTC 
    CAATATCCAT GGCCCAATCT TCTACCTCCG ACTTGGTTCC CGCCGTGCCG 
    TCGTCATATC TTCCTCCTCG CTGGCAAGAG AATGCTTCAC AGGTCAAAAC 
    GATGTCATTG TATCAAACCG CCCTCGTTTT CTAACCTCCA AATACATTGC 
    TTACAACTAC ACAACCATCG CAACAACATC TTACGGTGAC CACTGGCGTA 
    ACCTCCGCCG CATTTGCTCC CTCGAAATCG TCTCCTCAAA ACGTCTCGCC 
    AACTTTCTCC ACATCCGCAA AGAGGAGATC CAGCGCATGC TAACGAGACT 
    CTCACGTGAC GCCCGTGTCG GCAAAGAGGT CGAGCTCGAG TCTATCTTGT 
    ACGACCTAAC GTTCAACAAT ATCGTGAGGA TGGTTACAGG GAAGATATAC 
    TACGGCGACG ATGTCAGCGA CAAAGAAGAA GCAGAGTTGT TCAAGAAGCT 
    TTTTACTTTC ATCACCACTA ATAGTGGCGC GAGGCATCCT GGAGAATACT 
    TGCCCTTCAT GAAGATATTC GGAGGGAGCT TTGAGAAGGA GGTGAAAGCT 
    GCAGCAAAAG TCATCGATGA AATGTTGCAG CGTCTGCTTG ACGAGTGCAA 
    GAGTGATAAA GACGGTAACA CTATGGTTAA TCACTTGCTC TCTTTGCAAC 
    AGGACGACCC TGAGTACTAC ACTGACATCA TTATCAAAGG CTTAATGCTG 
    GGTATAATGG TTGCCTCATC AGAGACCTCC GCTTTGACAA TAGAGTGGGC 
    GATGGCGAGT TTGTTGAACC ACCCAAAAGT TTTGGACAAA GTAAAATTAG 
    AGATCGACGA GATAATCGGA CAAGACCGTT TGATCGAAGA ATCAGACATA 
    GCAAACCTTC CTTACCTCCA AAACGTAGTA TCCGAGACAC TCCGGCTACA 
    TCCAGCAGCG CCGGTTCTTG TGCCAAGATC AACAGCAGAA GACATCAAGA 
    TCGGAGGATA CGATGTGCCA CGTGACACAA TGGTAATGGT GAACGCGTGG 
    GCGATACATA GAGATCCAGA TCTTTGGACC GAACCGGAGA GGTTTAACCC 
    TGAGAGGTTC AACGGTGGAG AAGGAGAAAA AGATGATGTT CGTATGCTGA 
    TAGCGTTTGG AAGCGGACGG AGAATATGTC CCGGTGTTGG ACTAGCGCAC 
    AAGATTGTGA CATTAGCGTT AGGATCGTTA ATTCAATGCT TTGATTG

    Gene models with high sequence identity

    1. AT4G37410.1 [+] show detail - cytochrome P450, family 81, subfamily F, polypeptide 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 7.7e-92
    superfamily Cytochrome P450 5.2e-112
    HMMPanther CYTOCHROME P450 SUBFAMILY 91A 0
    HMMPanther Cytochrome P450 0
    Gene3D Cytochrome P450 2.7e-107
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, E-class, group I 2.2e-41
    FPrintScan Cytochrome P450, C-terminal 9e-09
    FPrintScan Cytochrome P450, C-terminal 9e-09
    FPrintScan Cytochrome P450, C-terminal 9e-09
    FPrintScan Cytochrome P450, C-terminal 9e-09

    See the detailed result >

    AT4G37410.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 81, subfamily F, polypeptide 4
    Curator Summary
    member of CYP81F
    Computational Description
    "cytochrome P450, family 81, subfamily F, polypeptide 4" (CYP81F4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily F, polypeptide 3 (TAIR:AT4G37400.1); Has 35936 Blast hits to 35767 proteins in 1827 species: Archae - 66; Bacteria - 5738; Metazoa - 11729; Fungi - 7404; Plants - 9478; Viruses - 6; Other Eukaryotes - 1515 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR