F25302

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25302

Determination of introduced cDNA(s)

RAFL16-78-L20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-78-L20 - Resource: pda10264

full reading [+] show sequence

GGTAAAAGAC AATGAGCAGC AGCAGCGATA CTCATGCCGG AGAATCTCGT 
CATCGCCGTA ACCCGATCCG GTGGCTACTC GATTTCGGTT TCTTCGTACA 
AGGATTCAGA GGATTCCCAT GGCTTGGAGC CAATTTCTTC CTCACAGAAC 
AGCTCCGTGT TAATCCTTCA GTGCTTCAGC TTCTTCAAAA CTCAGCCAAT 
CTTCCAATGG TCGCTAAACC CATCTACGGC GTCGTTTCAG ACTCTGTCTA 
CTTCTTTGGC CAACATCGAA TCCCATACAT CGCCGTTGGA GCTTTGTTAC 
AAGCAATCTC ATGGCTAGCT ATAGCATTCT TGTCAAGATC CAATGTATCA 
ATCTTAGCTT TATCGATATA TCTTCTCCTT AGTAATCTCG GTGCTTCCTT 
AGTAGAAGTA GCGAATGATG CTATTGTTGC TGAATCCGGA AAGCAAAAAA 
CCTCAGAGAC GCAATCCGGT GAGCTACCGT CATTTGTTTG GATGGTTTCT 
TCTCTTGGTG GAATCTTAGG TAACCTTTTA GGTGGTATTG CTATCAAAAC 
GTTTTCAGCT CAGTCAACGT TTCTTGTGTT TGGGATCTTG GCTCTTCTTC 
AGTTCTTGGT AACTATAAAC ATCAGAGAAA AGTCTCTTAA TCTTCCGGAA 
AATCCATCAC CAGCTGGTGG TATTAGGAAA CATCTCTCTG ATCTTTCGCA 
TGTGTTGAGG AAGCCCGAGA TTTCTTATTC GATAGCTTGG ATCGCGGTAT 
CAACCGCTGT GGTTCCGGTT TTGACAGGGA CTATGTTTTT TTACCAAACA 
AAGTTTCTGA AGGTTGATGC ATCACTTTTA GGGATCTCCA AGGTGTTTGG 
TCAAATTGCA ATGCTTCTTT GGGGTTTTGC ATATAATCGT TGGCTAAAAG 
CTATGCGGCC GAGGAAACTG CTGACAGCCA TTCAGGTGAC GATAGCTTTC 
TTTGTGATAT CCGATCTCTT GTTTGTGAAA GGCGTGTACC GGGATTTGGG 
AGTGTCGGAC TCTGTATATG TACTCTTCTT TTCTGGATTC TTGGAAACTC 
TATTTTACTT CAAGATTCTG CCGTTTACTG TCTTGATGGC TCGTCTCTGT 
CCTCCTGGAT GTGAAGGGTC TCTCATGGCA TTTGTCATGT CAGCCATTGC 
TCTTGCATTC ATAGTTAGCG GATATCTTGG AATCGTTCTT GCATCGTTTG 
TCGGTGTAAC AGAGGATGAT TTCTCGGGGT TTACTCGCGG ACTCGCTATA 
GAAGCGTGCT GCGTTGGGAT TCCGTTGATC TTAACTTCTT GGATATATGA 
TGAAGCGGAA ACAAAAGAGA AGAGTAAAAA GATAGAGTGA GTTCATTTGG 
GTTAATGTGT ACTTTGTATA TCTTTGTGAC ATTCTTGTGA TTTGAGGTTT 
TTCGTAGTCT CTCTCATTGT CTACATGACT ACATGGTCCA ACTTTCGATT 
GTGTAGCTGG GTCTTTGATT TTGCTTCACA CCGACTAAAA TATTTCGATG 
GTAGAAGCAT ACTTTGTATA CATGTGACTT TGTTTGGTGC TAGTGCTATT 
AGTGATTACT TGTTTATGTT C

Gene models with high sequence identity

AT1G64890.1 [+] show detail - Major facilitator superfamily protein
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
superfamily	Major facilitator superfamily, general substrate transporter	5e-32
HMMTigr	Biopterin transport-related protein BT1	2.7e-27
HMMPfam	Biopterin transport-related protein BT1	7.6e-126

See the detailed result >

AT1G64890.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 1088 Blast hits to 1079 proteins in 365 species: Archae - 17; Bacteria - 560; Metazoa - 42; Fungi - 5; Plants - 247; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Link: InterPro Scan - TAIR