F24528

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24528

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24528

Determination of introduced cDNA(s)

  • RAFL07-10-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-P19 - Resource: pda04113

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-P19 - full reading 
    ATAGGATGAA CAAAAACATC CTCTGTTTCT CTCTTTTCAT ATTTTTCTCC 
    ACATTTCCTC ATCTGGGTCA TCTCCAAAAA TGGTGCTTTT TTTTAATAAT 
    TCTTCACGTT TCTGGGTTTT TGGTTTTGTG ATTTGATGAT GCTTTTTTTT 
    TGTTTTTTTC AGATTTGATG ATAACCCAAA TTCGCAATTT GATTAGGACA 
    ACAACAACAA CTTTATTTAT CTGATTCCGT CTTTGATTTT CAGACAAGAA 
    AAGTATGTTG TTTCTAAGTC TTTTGATTTT TTTCAATTTC ATCTCCTTAC 
    TCGATTTTTT TTTTTTTTGG GTTTCTCTGA ATTGGAGCAG AAAAAAAAAA 
    GATGGAATCG GATCTGGGGA AGCTCTTCAT TGGTGGGATT TCGTGGGATA 
    CAGACGAAGA AAGGTTAAGA GACTACTTTA GCAACTATGG TGATGTTGTT 
    GAAGCTGTGA TCATGAGAGA TCGTGCCACA GGTCGTGCAC GTGGCTTCGG 
    CTTCATTGTC TTTGCAGACC CCTGTGTCTC AGAGAGAGTG ATCATGGATA 
    AACACATCAT CGATGGCCGC ACGGTTGAGG CGAAGAAGGC TGTGCCTCGA 
    GATGATCAGC AGGTGCTAAA GCGACACGCT AGTCCTATCC ACCTTATGTC 
    ACCTGTCCAT GGTGGTGGTG GAAGGACAAA GAAGATCTTC GTTGGAGGTT 
    TACCGTCTAG CATTACCGAG GAGGAGTTCA AGAACTACTT TGATCAGTTT 
    GGTACTATTG CTGATGTTGT TGTAATGTAT GATCATAACA CGCAGAGGCC 
    AAGAGGTTTT GGCTTCATCA CATTTGATTC AGATGATGCT GTTGATAGAG 
    TTCTTCACAA GACCTTCCAT GAGCTCAATG GGAAACTAGT TGAGGTCAAA 
    AGAGCTGTAC CTAAGGAGAT TTCCCCTGTT TCTAATATCC GAAGCCCGCT 
    TGCTAGCGGT GTTAACTATG GAGGCGGGTC TAATAGGATG CCTGCTAATA 
    GCTACTTTAA CAACTTTGCT CCTGGTCCTG GTTTTTATAA CAGTCTAGGT 
    CCTGTTGGTC GTCGGTTTAG TCCTGTTATT GGTAGTGGTA GAAATGCGGT 
    TTCTGCTTTT GGCCTCGGTT TGAATCATGA CTTGAGTTTG AATTTGAATC 
    CAAGCTGCGA TGGGACAAGT TCTACGTTTG GTTATAACCG TATTCCAAGC 
    AACCCTTACT TCAACGGTGC TTCCCCGAAC CGTTACACCT CTCCAATCGG 
    GCACAATAGA ACTGAGTCTC CTTACAATTC GAACAATAGA GACTTATGGG 
    GAAACAGAAC CGACACTGCA GGTCCCGGTT GGAACTTGAA TGTCTCGAAT 
    GGAAACAACA GAGGAAATTG GGGACTTCCT TCTTCTTCTG CTGTTAGTAA 
    TGATAACAAT GGCTTTGGAA GGAACTATGG GACAAGTTCT GGACTTTCCT 
    CGTCCCCATT TAATGGTTTT GAAGGTTCTA TAGGGGAACT GTACAGAGGC 
    GGCTCAGTCT ACAGCGACTC AACGTGGCAG CAACAGCAGC TACCATCTCA 
    GTCTTCTCAC GAGCTAGACA ATTTGTCTCG CGCTTACGGT TATGATATTG 
    ACAATGTAGG TTCAGACCCA TCTGCAAATG ACCCAGAAAC TTACAATGGA 
    AGCTACAATG TTGGAAATAG ACAAACTAAT AGAGGTAACA AAAAAATTCA 
    TCTCAATAAA ACTTGTAACT TGGATACATT TTGATCGCAA TCGAAATGTT 
    CTGATCTGTG TTTTATTTAC TTGTTGAGGT ATTGCTGCAT AGGTTATCAA 
    AAACCAAGAA AACAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G55550.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1.3e-21
    HMMPfam RNA recognition motif, RNP-1 8.5e-17
    HMMPfam RNA recognition motif, RNP-1 6.1e-18
    ProfileScan RNA recognition motif, RNP-1 17.285
    ProfileScan RNA recognition motif, RNP-1 18.598
    superfamily RNA-binding domain, RBD 1.3e-23
    superfamily RNA-binding domain, RBD 3.1e-22
    HMMPanther RNA-BINDING PROTEIN-RELATED 7.5e-145
    HMMPanther RNA-BINDING PROTEIN 7.5e-145
    HMMSmart RNA recognition motif, RNP-1 1.5e-22
    HMMSmart RNA recognition motif, RNP-1 1e-23

    See the detailed result >

    AT5G55550.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR