F24329

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24329

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24329

Determination of introduced cDNA(s)

  • RAFL05-13-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-F19 - Resource: pda02567

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-F19 - full reading 
    ACTTCTCGAA AACTGAAACC TTTGTAGAGA GAACCCATAG TTCGATAAAA 
    CATTCTTTTT GCAACTGAGA CTTGGCAACT TGGTTTTACT CAAAGTAAGA 
    TTTCTTCTTG TTGATGGTGA TAAGTTCAAT ATGATGAAAA GTTTGGCTAG 
    TGCGGTTGGA GGGAAGACGG CGAGGGCATG TGATAGCTGC GTGAAGAGGC 
    GGGCACGTTG GTATTGCGCA GCTGATGATG CCTTTCTTTG CCATGCTTGT 
    GACGGTTCGG TCCACTCGGC AAACCCTCTT GCTCGTAGGC ACGAGAGAGT 
    TCGCTTGAAA TCGGCTAGCG CCGGAAAGTA TCGCCATGCC TCGCCGCCTC 
    ACCAAGCCAC GTGGCATCAG GGATTTACAC GTAAAGCTCG GACCCCACGT 
    GGAGGCAAGA AGAGCCACAC GATGGTTTTT CATGATCTTG TGCCGGAGAT 
    GAGCACGGAG GATCAAGCGG AGAGTTACGA GGTGGAAGAG CAGCTCATAT 
    TTGAGGTGCC GGTGATGAAC TCGATGGTTG AGGAGCAATG CTTTAACCAA 
    TCCCTGGAGA AACAGAATGA GTTTCCAATG ATGCCCTTAA GTTTCAAGAG 
    TAGTGACGAA GAAGATGACG ACAACGCTGA GAGTTGTCTG AATGGTTTGT 
    TCCCAACCGA CATGGAACTA GCTCAGTTCA CAGCTGACGT GGAGACTCTA 
    CTCGGTGGAG GGGATCGAGA GTTTCATTCC ATAGAAGAAC TAGGGTTAGG 
    TGAGATGTTA AAGATCGAAA AAGAGGAGGT GGAGGAAGAG GGAGTTGTGA 
    CAAGAGAAGT GCATGATCAA GATGAAGGTG ATGAGACATC CCCATTTGAA 
    ATAAGCTTTG ACTACGAGTA CACACACAAG ACCACATTCG ATGAAGGAGA 
    AGAAGATGAG AAAGAAGACG TGATGAAGAA TGTGATGGAG ATGGGAGTGA 
    ATGAGATGAG TGGTGGGATT AAAGAAGAGA AGAAGGAGAA GGCTCTTATG 
    CTTAGATTGG ACTATGAATC AGTCATTTCC ACTTGGGGAG GCCAAGGGAT 
    CCCATGGACC GCCCGGGTGC CATCTGAAAT AGACCTCGAC ATGGTTTGTT 
    TCCCAACCCA TACCATGGGT GAAAGTGGAG CAGAGGCTCA TCATCACAAC 
    CACTTCCGCG GCCTAGGGTT ACACCTAGGA GATGCTGGGG ATGGAGGAAG 
    AGAGGCTAGG GTTTCAAGAT ACCGAGAGAA AAGGAGGACA AGGTTGTTCT 
    CCAAGAAGAT AAGGTACGAG GTACGTAAAT TGAATGCAGA GAAAAGGCCT 
    CGCATGAAAG GAAGGTTCGT CAAGAGATCT TCAATTGGTG TTGCTCACTA 
    AAGAACTTAA TTAATTATGG ATATTAAATT ACTTTGCTCT CATCTTGCTT 
    TTTTGTTGCT ATAGTTTTGG TGATTGTTAG CTTTCTTTTT CTGCATTCAT 
    AGAGAATTTT GCACGTTTTT GTGAGCTACG TATGTACATA AATATATCAC 
    CAAAAAATGT GACTATCTTG TAAGCACTGA TTTATATAGT CGATATAACG 
    TGAATTTTGA TTGCTGG

    Gene models with high sequence identity

    1. AT1G68520.1 [+] show detail - B-box type zinc finger protein with CCT domain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, B-box 10.694
    ProfileScan CCT domain 16.083
    HMMSmart Zinc finger, B-box 5e-10
    HMMPfam CCT domain 1.6e-19
    HMMPfam Zinc finger, B-box 1.2e-05

    See the detailed result >

    AT1G68520.1

    Model type
    Protein coding
    Short Description
    B-box type zinc finger protein with CCT domain
    Computational Description
    B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G25440.1); Has 3472 Blast hits to 2352 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 1; Plants - 3365; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR