F23544

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23544

Determination of introduced cDNA(s)

  • RAFL09-12-H17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-H17 - Resource: pda01544

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-12-H17 - full reading 
    GGGAAGCTCT CTCCAAAAAC AAACGAAAAG AAGCGACTTT TGCCTCTTTT 
    GGTCTCTCCC CTTCTCCGGA GAGATCTGCT CTCTCTATCA ATCTCTCAAT 
    CTGTAAGAAG AAGATTCCCA CTTCAGTAAA AGCCCTAACT TTACTTGGGA 
    AAGTTCTTCA TCTATCATCC TTCAATCGTC ATCATCCATG GCTGATCAAC 
    AAACCCTAGA TTCCTCTACT CCTCCTCCTA CTCAATCCGA TGATCTATCT 
    CACTCCCACT CTACTTCCTC TACTACTTCA GCTTCTTCTT CCTCAGATCC 
    ATCACTCTTG AGGTCTCTCT CCTTAAGTCG ACTCAACGCC GGAGCTCCTG 
    AGTTCGTTCC TGGTCGAACT ACTCCTCCGC TGCCTCAACC TCCGAGGATG 
    ATTATCCCGC CTCCTCCGCC GCACGGTATG CTTCATATGT ATCACCACCA 
    GCCTCCTTTC AATACTCCAG TTCTTGGTCC TGTTCCAATC CAGCCACACT 
    TGGTTCCTGT TCAAAATCAC CACCCTCATC ATCGCTTTCA TCAGCATCAT 
    CATCACAATC GTCATCAGAA TCAGCAATAT GTCCCGGTGA GGAATCACGG 
    AGAGTATCAG CAGCGTGGTG GTGTCGGTGG TGAGCAGGAA CCGGATTTGG 
    TTTCAAAGAA GAATGATCGG AGAGATCATA GTAAGAGAGA ATCTAAGAAC 
    GATCAAGTGA CTGAAACTGG AGCTTCTGTT TCTATTGATT CAAAAACTGG 
    TTTGCCTGAA GATTCTATCC AGAAGATTGT GAATCAGGTT GAATACTATT 
    TCAGTGACTT GAACTTGGCT ACTACAGATC ATCTCATGAG ATTCATTTGC 
    AAGGATCCTG AAGGATATGT GCCTATTCAT GTTGTTGCGT CGTTCAAGAA 
    AATTAAAGCT GTCATTAACA ATAATTCTCA GCTTGCCGCA GTGCTACAGA 
    ACTCAGCTAA GCTTTTTGTT AGTGAAGATG GAAAGAAAGT GAGACGCATA 
    AGTCCGATTA CTGAGTCGGC TATAGAAGAG CTTCAGTCTC GCATTATTGT 
    TGCTGAGAAT CTCCCTGAGG ATCATTGCTA CCAAAACCTG ATGAAGATTT 
    TTTCAACTGT TGGAAGTGTG AAGAACATCC GTACCTGCCA GCCTCAAAAT 
    AATGGAAGCG GTGCTCCACC CGCAGCGAGA TCAGCAGCTA AAAGCGATGG 
    TACGCTTTTC AGTAACAAGG TCCATGCTTT TGTTGAGTAT GAGATTGTTG 
    AGCTAGCCGA GAGAGCAGTT ACCGAGTTAA GTGAAGCGGG AAATTGGAGG 
    AGCGGTCTTA AAGTCCGGTT GATGCTAAAG CATCAGACGA AGGAACCAAA 
    ACAAGGTCAA GGGCGAGGAA GAAAAGGACA TGATGCAGAT GTAGAACATG 
    AGGAAGATGA TGCTACAACA TCCGAGCAGC AGCCGATTGA GAAACAATCT 
    GATGACTGTT CTGGGGAATG GGATACACAT ATGCAAGAGC AGCCAATAGG 
    AGAGGATCAA GGGAATGAGA AAGCGGCTGG GCAGAGAAAA GGGCGTAACA 
    GAGGTAGAGG AAAGGGACGA GGACGAGGGC AACCACACCA GAACCAAAAC 
    CAGAACAACA ACCACAGCCA TAACCAAAAC CACAACCACA ATGGGCGAGG 
    AAATCATCAT CATCATCATC ATCATCAAGT GGGAACACAA CCTTCGAACA 
    ATCCAATGAA CAACATGGAG CAACCAGGCA TGGGGAAACA GCAACCACCT 
    GGACCACGAA TGCCTGATGG GACCAGAGGA TTCTCAATGG GACGGGGAAA 
    GCCGGTTATG GTTCAGGCAG AGTGATCCAG AGCTGTTTTG AAAAGGAGGT 
    GATGTGGAAT TGTGAATGGT CAAAAAGGGA GATAAATAGA GAGAGAGCAA 
    GAGAGAAAGA GAGAGATTTA TCCTTCCCAT GGGGATTGGC TAGTTTTGCA 
    GACTTTATAT TTGTCTTACT TACTTCGAAA TACTTTTCAA AG

    Gene models with high sequence identity

    1. AT2G43970.1 [+] show detail - RNA-binding protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA-binding protein Lupus La 23.925
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 3.9e-24
    FPrintScan Lupus La protein 4.1e-08
    FPrintScan Lupus La protein 4.1e-08
    FPrintScan Lupus La protein 4.1e-08
    FPrintScan Lupus La protein 4.1e-08
    HMMPanther RNA-BINDING PROTEIN 1.2e-111
    HMMPanther LUPUS LA PROTEIN-RELATED 1.2e-111
    HMMSmart RNA-binding protein Lupus La 4.5e-39
    superfamily "Winged helix" DNA-binding domain 3.2e-27
    superfamily RNA-binding domain, RBD 1.3e-08
    HMMPfam RNA-binding protein Lupus La 4e-21

    See the detailed result >

    AT2G43970.1

    Model type
    Protein coding
    Short Description
    RNA-binding protein
    Computational Description
    RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436 Blast hits to 4197 proteins in 373 species: Archae - 4; Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426; Viruses - 18; Other Eukaryotes - 2356 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR