F23248

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23248

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23248

Determination of introduced cDNA(s)

  • RAFL07-14-A07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-14-A07 - Resource: pda17326

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-14-A07 - full reading 
    CCCTGATCCC AAGAAATCGA AACACAAAGC AATGGGCTCT TCTTCTCCAT 
    TAACAAGGAG AAACAGAGCA CCACCATCCT CTGTTTCCTC TGTTTATCTA 
    ATCTTTCTCT GTTTCTTCCT CTACTTTTTA AATTTCTCAA ACGCTCAATC 
    ATCGCCGGTT TTCGCCTGCG ACGTAGCTGC AAACCCTTCT CTCGCCGCCT 
    GGTTTCTGCA ACACCGTTTT GAAGATCGAA TACCGAGTCG CTGATCTGGT 
    CGCGAGGCTC ACGTTGCAAG AAAAGATCGG GTTTTTAGTG AGTAAAGCTA 
    ACGGCGTGAC TCGTCTTGGG ATTCCAACGT ATGAATGGTG GTCTGAAGCA 
    CTTCACGGCG TTTCTTACAT CGGACCCGGC ACGCATTTTT CTAGCCAAGT 
    TCCCGGAGCT ACGAGTTTCC CGCAGGTTAT ACTCACCGCC GCTTCTTTCA 
    ACGTATCTCT GTTTCAAGCC ATTGGCAAGG TCGTCTCAAC GGAAGCGAGG 
    GCAATGTACA ACGTGGGATT AGCCGGACTA ACGTATTGGT CACCGAACGT 
    GAACATATTC CGAGATCCAA GATGGGGAAG AGGGCAAGAG ACTCCAGGAG 
    AAGATCCATT GCTCGCTAGT AAGTATGCTT CAGGGTACGT TAAGGGTCTT 
    CAAGAGACTG ACGGTGGCGA TTCTAACCGT CTCAAAGTCG CCGCCTGCTG 
    CAAACACTAT ACCGCTTACG ATGTCGATAA TTGGAAAGGC GTAGAACGTT 
    ACAGTTTCAA CGCCGTGGTG ACTCAACAAG ATATGGATGA TACGTATCAA 
    CCACCGTTCA AGAGTTGTGT GGTTGATGGG AATGTGGCGA GTGTTATGTG 
    TTCTTACAAT CAAGTTAACG GCAAACCGAC ATGCGCTGAT CCAGATCTGC 
    TCTCTGGTGT TATCCGCGGT GAATGGAAAT TAAATGGGTA CATTGTTTCA 
    GATTGTGATT CAGTAGATGT CTTGTATAAG AACCAACACT ATACAAAGAC 
    TCCAGCTGAA GCTGCAGCCA TATCTATATT GGCAGGTTTG GATTTAAACT 
    GTGGTTCATT CTTGGGTCAA CATACAGAGG AAGCAGTTAA GTCGGGTTTG 
    GTAAACGAGG CAGCTATCGA TAAAGCGATT TCGAACAACT TTTTGACCCT 
    TATGCGTTTA GGATTCTTTG ATGGAAACCC AAAGAACCAA ATCTATGGCG 
    GGTTAGGTCC TACCGACGTT TGCACGTCTG CGAATCAAGA GCTAGCAGCA 
    GATGCAGCAA GACAAGGCAT TGTTCTACTC AAGAATACTG GATGCTTACC 
    GCTTTCTCCT AAATCGATCA AAACACTAGC CGTGATTGGA CCAAACGCGA 
    ATGTCACCAA AACAATGATT GGAAACTACG AAGGCACGCC GTGTAAATAC 
    ACAACACCAC TACAAGGACT AGCCGGGACG GTATCTACAA CATATCTACC 
    AGGCTGCTCC AATGTAGCTT GTGCTGTAGC GGATGTAGCC GGCGCCACGA 
    AACTAGCAGC CACTGCAGAT GTGTCTGTGC TTGTGATCGG TGCCGATCAA 
    TCAATCGAGG CAGAGAGCCG AGACAGAGTC GACCTGCATC TTCCTGGACA 
    GCAACAAGAG CTGGTGATCC AAGTGGCTAA AGCAGCAAAA GGACCGGTCT 
    TGCTCGTCAT TATGTCCGGT GGAGGTTTCG ATATTACATT CGCTAAGAAT 
    GACCCAAAGA TCGCCGGAAT TTTGTGGGTT GGTTATCCCG GAGAAGCCGG 
    TGGTATCGCC ATTGCTGATA TCATCTTTGG CCGTTATAAT CCAAGTGGGA 
    AATTACCGAT GACGTGGTAT CCACAGTCGT ATGTAGAGAA AGTTCCGATG 
    ACAATAATGA ACATGAGACC CGATAAAGCA AGCGGGTATC CGGGTCGGAC 
    TTACCGATTC TACACCGGAG AAACAGTATA CGCATTCGGA GATGGACTCA 
    GCTACACCAA ATTCAGTCAC ACTTTAGTCA AAGCTCCAAG TCTCGTTTCT 
    CTCGGTCTCG AAGAGAATCA CGTTTGCCGA TCATCGGAAT GTCAATCGCT 
    AGACGCGATC GGACCGCACT GCGAAAACGC TGTCTCCGGC GGTGGATCGG 
    CGTTTGAAGT TCATATCAAG GTACGAAACG GAGGAGATAG AGAAGGGATT 
    CACACGGTGT TTCTATTCAC GACGCCGCCG GCGATTCACG GATCGCCGAG 
    GAAGCATTTG GTAGGATTCG AGAAGATTCG ATTGGGGAAG AGGGAAGAAG 
    CGGTGGTTAG GTTTAAGGTA GAGATATGTA AAGATCTGAG TGTGGTTGAT 
    GAGATTGGGA AGAGGAAGAT TGGTTTGGGA AAGCATCTTC TTCATGTCGG 
    AGATTTAAAA CATTCCTTAA GCATTAGAAT CTGATTCTAT ATTTTTATTT 
    GAGGAAGAAA AAAAGAATAT TAATATGCTT AAGCTTTTGC AAGTTGGAAA 
    AGAAAAGTAA TAAAAAAAAG AAATTGTGAA TCACAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G64570.1 [+] show detail - beta-D-xylosidase 4
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 3, N-terminal 1.2e-54
    HMMPfam Glycoside hydrolase, family 3, C-terminal 8.8e-49
    Gene3D Glycoside hydrolase, family 3, N-terminal 1.8e-87
    Gene3D no description 2.9e-47
    superfamily Glycoside hydrolase, catalytic core 5.8e-100
    superfamily Glycoside hydrolase, family 3, C-terminal 1.2e-24
    FPrintScan Glycoside hydrolase, family 3, N-terminal 2e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 2e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 2e-06

    See the detailed result >

    AT5G64570.1

    Model type
    Protein coding
    Short Description
    beta-D-xylosidase 4
    Curator Summary
    Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
    Computational Description
    beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR