F22716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22716

Determination of introduced cDNA(s)

  • RAFL09-18-N20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-N20 - Resource: pda05477

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-N20 - full reading 
    ATCAAAAACT TTTACCTCTC ATTGGTTTCT TCTTTATCAC ACTGTTACGC 
    TTGGATTCTC ATTTCTTCAA GTTCATAACG CTCGGATCAA TCAGGAAGAC 
    GAACTTGAAC TTTCTTTTTT TCATCATTAC CCAAAGCTAT GAGGCTCACA 
    CCACCAATAG CTCCGCCGTC ATGAATCCTT CTCTTCCAGG TCAACACAAG 
    TCAGAGCTCC AAAAATGGAG TCATGCGATT GTTTTGAGAC GCATGTGAAT 
    CAAGATGATC TGTTAGTGAA GTACCAATAC ATCTCAGATG CGTTGATTGC 
    TCTTGCATAC TTCTCAATCC CACTCGAGCT TATCTATTTC GTGCAAAAGT 
    CTGCTTTCTT CCCTTACAAA TGGGTGCTTA TGCAGTTTGG AGCCTTTATC 
    ATTCTCTGTG GAGCTACGCA TTTCATCAAC CTATGGATGT TCTTCATGCA 
    TTCCAAAGCC GTTGCCATTG TCATGACTAT TGCTAAAGTC TCTTGCGCGG 
    TTGTGTCGTG TGCTACCGCG TTGATGTTGG TTCATATTAT TCCTGATCTT 
    CTCAGTGTTA AGAACAGGGA ATTGTTTCTC AAGAAGAAAG CTGATGAGTT 
    AGATAGAGAA ATGGGTCTTA TTTTAACACA AGAGGAGACT GGTAGGCATG 
    TTAGGATGCT TACTCATGGA ATTAGAAGAA CTCTTGATAG GCATACTATT 
    TTAAGAACCA CTCTTGTTGA GCTTGGTAAA ACTCTTTGTC TTGAGGAATG 
    TGCGTTGTGG ATGCCTTCTC AAAGTGGTTT ATATTTGCAG CTTTCTCATA 
    CTTTGAGTCA TAAAATACAA GTTGGAAGCA GTGTGCCGAT AAATCTCCCG 
    ATTATTAATG AACTCTTCAA TAGCGCTCAA GCTATGCACA TACCTCATTC 
    TTGTCCTTTG GCTAAGATTG GGCCTCCGGT TGGGAGATAT TCACCTCCTG 
    AGGTTGTTTC TGTCCGTGTT CCTCTTTTAC ATCTCTCTAA TTTCCAAGGC 
    AGTGACTGGT CGGATCTCTC TGGCAAAGGT TACGCTATCA TGGTCCTGAT 
    TCTCCCAACC GATGGTGCAA GAAAATGGAG AGACCATGAG TTAGAGCTTG 
    TAGAAAACGT GGCGGATCAG GTGGCTGTGG CTCTCTCACA TGCTGCAATT 
    TTGGAAGAAT CCATGCACGC TCGTGACCAG CTTATGGAGC AGAATTTTGC 
    TTTAGACAAG GCTCGTCAAG AGGCTGAGAT GGCAGTACAT GCTCGAAATG 
    ATTTCCTAGC TGTTATGAAC CACGAGATGA GGACACCGAT GCATGCCATC 
    ATCTCTCTTT CTTCTCTTCT CCTTGAGACT GAGCTGTCTC CAGAGCAAAG 
    AGTTATGATC GAGACAATAC TGAAAAGCAG CAATCTTGTG GCTACACTAA 
    TCAGCGACGT TCTGGATCTT TCGAGATTGG AAGATGGGAG CTTACTCTTG 
    GAAAATGAAC CATTCAGTCT ACAAGCGATC TTTGAAGAGG TCATCTCTTT 
    GATAAAGCCA ATCGCATCAG TGAAGAAACT ATCAACGAAT CTGATTCTGT 
    CTGCAGACTT ACCAACTTAT GCTATTGGTG ATGAGAAACG TCTGATGCAA 
    ACAATTCTTA ACATCATGGG CAACGCTGTG AAATTTACTA AGGAAGGCTA 
    CATCTCCATA ATAGCCTCTA TCATGAAACC CGAGTCCTTA CAAGAATTAC 
    CATCTCCAGA ATTTTTTCCA GTTCTCAGTG ACAGTCACTT CTACCTATGT 
    GTGCAGGTGA AGGACACAGG GTGTGGAATT CACACACAAG ACATTCCTTT 
    GCTCTTTACC AAATTTGTAC AGCCTCGGAC CGGAACTCAG AGGAACCATT 
    CCGGTGGAGG ACTCGGGCTA GCTCTCTGTA AACGGTTTGT CGGGCTAATG 
    GGAGGATACA TGTGGATAGA AAGTGAAGGC CTAGAGAAAG GCTGCACAGC 
    TTCGTTCATC ATCAGGCTTG GTATCTGCAA CGGTCCAAGC AGTAGCAGTG 
    GTTCAATGGC GCTACATCTT GCAGCTAAAT CACAAACCAG ACCGTGGAAC 
    TGGTGATACA TTACGTTGGA AAGACTTGTA TTGAGGTGAG ACTTTTTAAC 
    TACACAGCAG CAAGAGAAAG AAGAAAATAC ATGACCGGAC GGTGTGATCT 
    AACTTATTGG ATTTTGTTGG ATGTAATATG TAAAATAAAA ATCCTATATA 
    CGGGGAGAGG TACCTTATCT GTTCTCACTA TATTTTATTG AACATTACTT 
    TAGAGAATAT GTTTTGGAAT TCACTACTAA ATAAACGATA TAAATCTTCA 
    C

    Gene models with high sequence identity

    1. AT2G40940.1 [+] show detail - ethylene response sensor 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ETHYLENE RECEPTOR 0
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 0
    ProfileScan Signal transduction histidine kinase, core 39.82
    HMMSmart GAF 1.5e-13
    HMMSmart Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 2.1e-20
    HMMSmart ATPase-like, ATP-binding domain 6.5e-30
    HMMPfam ATPase-like, ATP-binding domain 4.2e-24
    HMMPfam Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 1.3e-16
    HMMPfam GAF 1.4e-13
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.9e-07
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.9e-07
    Gene3D ATPase-like, ATP-binding domain 1.8e-24
    superfamily ATPase-like, ATP-binding domain 2.1e-35
    superfamily Signal transduction histidine kinase, homodimeric 3e-16
    superfamily GAF domain-like 0.0011

    See the detailed result >

    AT2G40940.1

    Model type
    Protein coding
    Short Description
    ethylene response sensor 1
    Curator Summary
    Ethylene receptor, subfamily 1. Has histidine kinase activity.
    Computational Description
    ethylene response sensor 1 (ERS1); FUNCTIONS IN: ethylene binding, protein histidine kinase activity, receptor activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase, hybrid-type, ethylene sensor (TAIR:AT1G66340.1); Has 78353 Blast hits to 77870 proteins in 2969 species: Archae - 539; Bacteria - 69363; Metazoa - 12; Fungi - 1128; Plants - 1692; Viruses - 20; Other Eukaryotes - 5599 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR