F22206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22206

Determination of introduced cDNA(s)

  • RAFL06-72-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-P05 - Resource: pda03418

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-P05 - full reading 
    AGAGCACAAC ACCACGATGA CGACCAAGGC CATGGAGAGA GGATTTAAGC 
    TGATTCTGGG TTCTCAATCC ATGGCGAGAA AGAGGATTTT GGCTGAAATG 
    GGATATGATT ACACTATCGT GACTGCAGAC ATTGATGAGA AAGCTATTAG 
    GACAGAGAAG CCTGAAGATT TGGTTGTGGC TCTTGCTGAA GCCAAGGCAA 
    ATGAGATTAT ATCGAAATTG GGAGGTGAGA GCCAGTTTGC AAAAGATCCT 
    CAACCAACTC TTTTGATTAC TGCAGACACT GTTGTTGTGT ACAAAGGTGT 
    TATTAGAGAA AAACCAACCA CTAAAGAAGA AGCTCGTGAA TTTATCAAAG 
    GCTATTCCGG TTCACACGGA GGAGTTGTGG GATCTGTTCT TGTTAGAAAC 
    TTGAAAACTG GAGTTAAAAA AGGAGGATGG ACAAAGCTGA GGTTTATTTC 
    CATGAGATAC CAGAACAAGT CATTGACGGT CTTATTGATG ATGCAATAAC 
    TTATAAGGTT GCTGGAGGTT TAACACTGGA GCATCCCCTC ATTTCACCCT 
    TTATCGATTC TGTGGTGGGA GGGGTTGATA CAGTCATGGG ACTTCCTAAA 
    GAACTCACAG AAAAATTCAT AAACGATGTG TTGTTGTAGC TCAAGTCCCT 
    TTTTGATTAT GTAGGAATAC TTTTGAATCT CTCTAATCAA TCATTTATTT 
    TGTAATTTGG TAAAACACAG ATTTATCGTA TCATGTTTTT AAGTAGTGAT 
    GATGTTTTCA GG

    Gene models with high sequence identity

    1. AT5G66550.1 [+] show detail - Maf-like protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00017
    Gene3D no description 6.1e-24
    HMMPIR Maf-like protein 3e-08
    HMMPfam Maf-like protein 4.6e-07
    HMMPfam Maf-like protein 2.8e-26
    superfamily Maf/Ham1 1.3e-09
    superfamily Maf/Ham1 1.2e-26

    See the detailed result >

    AT5G66550.1

    Model type
    Protein coding
    Short Description
    Maf-like protein
    Computational Description
    Maf-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: Maf-like protein (TAIR:AT5G42770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR